[HTML][HTML] ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations

…, AC Freise, NJB Kraft, J Moberg-Parker… - …, 2018 - ncbi.nlm.nih.gov
Environmental DNA (eDNA) metabarcoding is becoming a core tool in ecology and conservation
biology, and is being used in a growing number of education, biodiversity monitoring, …

Comparing the impact of course-based and apprentice-based research experiences in a life science laboratory curriculum

C Shapiro, J Moberg-Parker, S Toma… - … of microbiology & …, 2015 - Am Soc Microbiol
This four-year study describes the assessment of a bifurcated laboratory curriculum
designed to provide upper-division undergraduate majors in two life science departments …

[HTML][HTML] Genomic diversity of bacteriophages infecting Microbacterium spp

…, AL McKinney, EC Merkhofer, J Moberg Parker… - PLoS …, 2020 - journals.plos.org
The bacteriophage population is vast, dynamic, old, and genetically diverse. The genomics
of phages that infect bacterial hosts in the phylum Actinobacteria show them to not only be …

The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity

RS Meyer, MM Ramos, M Lin, TM Schweizer… - California …, 2021 - escholarship.org
Climate change is leading to habitat shifts that threaten species persistence throughout
California’s unique ecosystems. Baseline biodiversity data would provide opportunities for …

Model-driven engineering of gene expression from RNA replicons

J Beal, TE Wagner, T Kitada, O Azizgolshani… - ACS synthetic …, 2015 - ACS Publications
RNA replicons are an emerging platform for engineering synthetic biological systems. Replicons
self-amplify, can provide persistent high-level expression of proteins even from a small …

[HTML][HTML] PUMAA: a platform for accessible microbiome analysis in the undergraduate classroom

…, S Mangul, C Shapiro, J Moberg Parker - Frontiers in …, 2020 - frontiersin.org
Improvements in high-throughput sequencing makes targeted amplicon analysis an ideal
method for the study of human and environmental microbiomes by undergraduates. Multiple …

Strategies for using peer‐assisted learning effectively in an undergraduate bioinformatics course

C Shapiro, C Ayon, J MobergParker… - Biochemistry and …, 2013 - Wiley Online Library
This study used a mixed methods approach to evaluate hybrid peer‐assisted learning
approaches incorporated into a bioinformatics tutorial for a genome annotation research project. …

[HTML][HTML] BlueFeather, the singleton that wasn't: Shared gene content analysis supports expansion of Arthrobacter phage Cluster FE

…, E Lee, I Vuong, K Reddi, AC Freise, J Moberg Parker - Plos one, 2021 - journals.plos.org
Bacteriophages (phages) exhibit high genetic diversity, and the mosaic nature of the shared
genetic pool makes quantifying phage relatedness a shifting target. Early parameters for …

The California environmental DNA “CALeDNA” program

…, WY Kwan, M Lin, A Freise, J Moberg-Parker… - BioRxiv, 2019 - biorxiv.org
Global change is leading to habitat shifts that threaten species persistence throughout
California’s unique ecosystems. Baseline biodiversity data provide opportunities for ecosystems …

[PDF][PDF] Supplemental Materials for Comparing the Impact of Course-Based and Apprentice-Based Research Experiences in a Life Science Laboratory Curriculum

C Shapiro, J Moberg-Parker… - … of microbiology & …, 2015 - stemfutures.education.asu.edu
… 1†† , Jordan Moberg-Parker … Faculty who contributed significantly to Path 1curriculum
development efforts: Erin Sanders, Jordan Moberg Parker, Ann Hirsch, Pei Yun Lee, Gaston …