[PDF][PDF] Structural and functional basis of mammalian microRNA biogenesis by Dicer

D Zapletal, E Taborska, J Pasulka, R Malik, K Kubicek… - Molecular Cell, 2022 - cell.com
MicroRNA (miRNA) and RNA interference (RNAi) pathways rely on small RNAs produced
by Dicer endonucleases. Mammalian Dicer primarily supports the essential gene-regulating …

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

…, S Ganesh, R Karlic, R Malik, J Pasulka… - Genome …, 2017 - genome.cshlp.org
Retrotransposons are “copy-and-paste” insertional mutagens that substantially contribute to
mammalian genome content. Retrotransposons often carry long terminal repeats (LTRs) for …

Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1

K Kubicek, H Cerna, P Holub, J Pasulka… - Genes & …, 2012 - genesdev.cshlp.org
Recruitment of appropriate RNA processing factors to the site of transcription is controlled
by post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II (…

TUT‐DIS3L2 is a mammalian surveillance pathway for aberrant structured non‐coding RNAs

D Ustianenko, J Pasulka, Z Feketova, L Bednarik… - The EMBO …, 2016 - embopress.org
Uridylation of various cellular RNA species at the 3′ end has been generally linked to RNA
degradation. In mammals, uridylated pre‐let‐7 miRNAs and mRNAs are targeted by the 3′ …

[HTML][HTML] Type I interferon signaling in malignant blasts contributes to treatment efficacy in AML patients

…, M Kovar, M Reinis, R Mikyskova, J Pasulka… - Cell Death & …, 2023 - nature.com
While type I interferon (IFN) is best known for its key role against viral infection, accumulating
preclinical and clinical data indicate that robust type I IFN production in the tumor …

An autologous dendritic cell vaccine promotes anticancer immunity in patients with ovarian cancer with low mutational burden and cold tumors

…, M Hensler, L Kasikova, T Lanickova, J Pasulka… - Clinical Cancer …, 2022 - AACR
Purpose: The successful implementation of immune checkpoint inhibitors (ICI) in the clinical
management of various solid tumors has raised considerable expectations for patients with …

[HTML][HTML] Formation of spermatogonia and fertile oocytes in golden hamsters requires piRNAs

Z Loubalova, H Fulka, F Horvat, J Pasulka, R Malik… - Nature Cell …, 2021 - nature.com
PIWI-interacting RNAs (piRNAs) support the germline by suppressing retrotransposons.
Studies of the pathway in mice have strongly shaped the view that mammalian piRNAs are …

Can we execute stable microsecond-scale atomistic simulations of protein–RNA complexes?

…, P Banas, M Otyepka, J Pasulka… - Journal of chemical …, 2015 - ACS Publications
We report over 30 μs of unrestrained molecular dynamics simulations of six protein–RNA
complexes in explicit solvent. We utilize the AMBER ff99bsc0χ OL3 RNA force field combined …

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3′-end extended forms of snRNAs

…, D Potesil, M Bartosovic, J Pasulka… - Nucleic Acids …, 2015 - academic.oup.com
The Nuclear Exosome Targeting (NEXT) complex is a key cofactor of the mammalian nuclear
exosome in the removal of Promoter Upstream Transcripts (PROMPTs) and potentially …

Peripheral gene signatures reveal distinct cancer patient immunotypes with therapeutic implications for autologous DC-based vaccines

…, J Rakova, L Kasikova, T Lanickova, J Pasulka… - …, 2022 - Taylor & Francis
Dendritic cells (DCs) have received considerable attention as potential targets for the
development of novel cancer immunotherapies. However, the clinical efficacy of DC-based …