The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution

JF Ryan, K Pang, CE Schnitzler, AD Nguyen… - Science, 2013 - science.org
Introduction An understanding of ctenophore biology is critical for reconstructing events that
occurred early in animal evolution. The phylogenetic relationship of ctenophores (comb …

[HTML][HTML] Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

…, O Piskurek, J Poulain, F Rodriguez, JF Ryan… - Nature, 2013 - nature.com
Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but
bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of …

[HTML][HTML] Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

…, M Medina, DC Plachetzki, AG Collins, JF Ryan - BMC evolutionary …, 2018 - Springer
Background The phylogeny of Cnidaria has been a source of debate for decades, during
which nearly all-possible relationships among the major lineages have been proposed. The …

The mid-developmental transition and the evolution of animal body plans

…, T Larsson, SY Liu, A Jerafi-Vider, K Yaniv, JF Ryan… - Nature, 2016 - nature.com
Animals are grouped into ~35 ‘phyla’ based upon the notion of distinct body plans 1 , 2 , 3 ,
4 . Morphological and molecular analyses have revealed that a stage in the middle of …

[HTML][HTML] Pre-Bilaterian Origins of the Hox Cluster and the Hox Code: Evidence from the Sea Anemone, Nematostella vectensis

JF Ryan, ME Mazza, K Pang, DQ Matus, AD Baxevanis… - PloS one, 2007 - journals.plos.org
Background Hox genes were critical to many morphological innovations of bilaterian
animals. However, early Hox evolution remains obscure. Phylogenetic, developmental, and …

Rising starlet: the starlet sea anemone, Nematostella vectensis

…, AR Reitzel, PM Burton, ME Mazza, JF Ryan… - …, 2005 - Wiley Online Library
In recent years, a handful of model systems from the basal metazoan phylum Cnidaria have
emerged to challenge long‐held views on the evolution of animal complexity. The most‐…

The breast cancer information core: database design, structure, and scope

C Szabo, A Masiello, JF Ryan, BIC Consortium… - Human …, 2000 - Wiley Online Library
The Breast Cancer Information Core (BIC) is an open access, on‐line mutation database for
breast cancer susceptibility genes. In addition to creating a catalogue of all mutations and …

[HTML][HTML] The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis

JF Ryan, PM Burton, ME Mazza, GK Kwong… - Genome biology, 2006 - Springer
Background Homeodomain transcription factors are key components in the developmental
toolkits of animals. While this gene superclass predates the evolutionary split between …

[HTML][HTML] The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

JF Ryan, K Pang… - Evodevo, 2010 - Springer
Background The much-debated phylogenetic relationships of the five early branching
metazoan lineages (Bilateria, Cnidaria, Ctenophora, Placozoa and Porifera) are of fundamental …

Flexible circuits and architectures for ultralow power

BH Calhoun, JF Ryan, S Khanna… - Proceedings of the …, 2010 - ieeexplore.ieee.org
Subthreshold digital circuits minimize energy per operation and are thus ideal for ultralow-power
(ULP) applications with low performance requirements. However, a large range of ULP …