[HTML][HTML] Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty
Our ability to forecast epidemics far into the future is constrained by the many complexities
of disease systems. Realistic longer-term projections may, however, be possible under well-…
of disease systems. Realistic longer-term projections may, however, be possible under well-…
[HTML][HTML] Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November …
Background The COVID-19 Scenario Modeling Hub convened nine modeling teams to project
the impact of expanding SARS-CoV-2 vaccination to children aged 5–11 years on COVID-…
the impact of expanding SARS-CoV-2 vaccination to children aged 5–11 years on COVID-…
Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource
…, J Murga-Moreno, M Paris, J Outten… - Molecular biology …, 2021 - academic.oup.com
Drosophila melanogaster is a leading model in population genetics and genomics, and a
growing number of whole-genome data sets from natural populations of this species have …
growing number of whole-genome data sets from natural populations of this species have …
[HTML][HTML] Informing pandemic response in the face of uncertainty. An evaluation of the US COVID-19 Scenario Modeling Hub
Our ability to forecast epidemics more than a few weeks into the future is constrained by the
complexity of disease systems, our limited ability to measure the current state of an epidemic…
complexity of disease systems, our limited ability to measure the current state of an epidemic…
Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering …
In Spring 2021, the highly transmissible SARS-CoV-2 Delta variant began to cause increases
in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed …
in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed …
[HTML][HTML] Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the US COVID-19 Scenario Modeling Hub
Background Coronavirus Disease 2019 (COVID-19) continues to cause significant
hospitalizations and deaths in the United States. Its continued burden and the impact of annually …
hospitalizations and deaths in the United States. Its continued burden and the impact of annually …
Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support
This paper describes an integrated, data-driven operational pipeline based on national
agent-based models to support federal and state-level pandemic planning and response. The …
agent-based models to support federal and state-level pandemic planning and response. The …
Ai-driven agent-based models to study the role of vaccine acceptance in controlling covid-19 spread in the us
…, P Porebski, B Klahn, J Outten… - … Conference on Big …, 2021 - ieeexplore.ieee.org
We study the role of vaccine acceptance in controlling the spread of COVID-19 in the US using
AI-driven agent-based models. Our study uses a 288 million node social contact network …
AI-driven agent-based models. Our study uses a 288 million node social contact network …
[HTML][HTML] Methods and developments in graphical pangenomics
J Outten, A Warren - Journal of the Indian Institute of Science, 2021 - Springer
Pangenomes are organized collections of the genomic information from related individuals
or groups. Graphical pangenomics is the study of these pangenomes using graphical …
or groups. Graphical pangenomics is the study of these pangenomes using graphical …
Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the US COVID-19 Scenario Modeling Hub (preprint)
… Sung-mok Jung; Sara L Loo; Emily Howerton; Lucie Contamin; Claire P Smith; Erica C
Carcelén; Katie Yan; Samantha J Bents; Jessi Espino; John Levander; Joseph C Lemaitre; …
Carcelén; Katie Yan; Samantha J Bents; Jessi Espino; John Levander; Joseph C Lemaitre; …