User profiles for Josh P. Clevenger

Josh Clevenger

Verified email at hudsonalpha.org
Cited by 3349

[HTML][HTML] What lies beyond the eye: the molecular mechanisms regulating tomato fruit weight and shape

…, M Chakrabarti, YH Chu, JP Clevenger… - Frontiers in Plant …, 2014 - frontiersin.org
Domestication of fruit and vegetables resulted in a huge diversity of shapes and sizes of the
produce. Selections that took place over thousands of years of alleles that increased fruit …

[HTML][HTML] Haplotype-based genotyping in polyploids

JP Clevenger, W Korani, P Ozias-Akins… - Frontiers in plant …, 2018 - frontiersin.org
Accurate identification of polymorphisms from sequence data is crucial to unlocking the
potential of high throughput sequencing for genomics. Single nucleotide polymorphisms (SNPs) …

Machine learning as an effective method for identifying true single nucleotide polymorphisms in polyploid plants

…, JP Clevenger, Y Chu, P Ozias‐Akins - The Plant …, 2019 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) have many advantages as molecular markers
since they are ubiquitous and codominant. However, the discovery of true SNPs in polyploid …

[HTML][HTML] A SNP-Based Linkage Map Revealed QTLs for Resistance to Early and Late Leaf Spot Diseases in Peanut (Arachis hypogaea L.)

S Han, M Yuan, JP Clevenger, C Li, A Hagan… - Frontiers in plant …, 2018 - frontiersin.org
Cultivated peanut (Arachis hypogaea L.) is an important oilseed crop that is grown extensively
in Africa, Asia and America. The diseases early and late leaf spot severely constrains …

SWEEP: a tool for filtering high-quality SNPs in polyploid crops

JP Clevenger, P Ozias-Akins - G3: Genes, Genomes, Genetics, 2015 - academic.oup.com
High-throughput next-generation sequence-based genotyping and single nucleotide
polymorphism (SNP) detection opens the door for emerging genomics-based breeding strategies …

The control of tomato fruit elongation orchestrated by sun, ovate and fs8. 1 in a wild relative of tomato

S Wu, JP Clevenger, L Sun, S Visa, Y Kamiya… - Plant Science, 2015 - Elsevier
Within the cultivated tomato germplasm, sun, ovate and fs8.1 are the three predominant QTLs
controlling fruit elongation. Although SUN and OVATE have been cloned, their role in plant …

Candidate gene selection and detailed morphological evaluations of fs8.1, a quantitative trait locus controlling tomato fruit shape

L Sun, GR Rodriguez, JP Clevenger… - Journal of …, 2015 - academic.oup.com
fs8.1 is a major quantitative trait locus (QTL) that controls the elongated shape of tomato (Solanum
lycopersicum) fruit. In this study, we fine-mapped the locus from a 47Mb to a 3.03Mb …

A Comparison of sun, ovate, fs8.1 and Auxin Application on Tomato Fruit Shape and Gene Expression

Y Wang, JP Clevenger, E Illa-Berenguer… - Plant and Cell …, 2019 - academic.oup.com
Elongated tomato fruit shape is the result of the action of the fruit shape genes possibly in
coordination with the phytohormone auxin. To investigate the possible link between auxin and …

Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing to Isolate Stress Tolerance and Aflatoxin Production

JC Fountain, JP Clevenger, B Nadon… - G3: Genes …, 2020 - academic.oup.com
Efforts in genome sequencing in the Aspergillus genus have led to the development of quality
reference genomes for several important species including A. nidulans, A. fumigatus, and …

[HTML][HTML] Transcriptome Profile Reveals Drought-Induced Genes Preferentially Expressed in Response to Water Deficit in Cultivated Peanut (Arachis hypogaea L.)

…, P Dang, W Wang, R Graze, JP Clevenger… - Frontiers in Plant …, 2021 - frontiersin.org
Cultivated peanut (Arachis hypogaea) is one of the most widely grown food legumes in the
world, being valued for its high protein and unsaturated oil contents. Drought stress is one of …