User profiles for Joshua L. Payne
Joshua L. PaynePrincipal Scientist, pRED Roche Verified email at env.ethz.ch Cited by 1912 |
The causes of evolvability and their evolution
Evolvability is the ability of a biological system to produce phenotypic variation that is both
heritable and adaptive. It has long been the subject of anecdotal observations and theoretical …
heritable and adaptive. It has long been the subject of anecdotal observations and theoretical …
The robustness and evolvability of transcription factor binding sites
Robustness, the maintenance of a character in the presence of genetic change, can help
preserve adaptive traits but also may hinder evolvability, the ability to bring forth novel …
preserve adaptive traits but also may hinder evolvability, the ability to bring forth novel …
Cryptic genetic variation accelerates evolution by opening access to diverse adaptive peaks
Cryptic genetic variation can facilitate adaptation in evolving populations. To elucidate the
underlying genetic mechanisms, we used directed evolution in Escherichia coli to accumulate …
underlying genetic mechanisms, we used directed evolution in Escherichia coli to accumulate …
A thousand empirical adaptive landscapes and their navigability
The adaptive landscape is an iconic metaphor that pervades evolutionary biology. It was
mostly applied in theoretical models until recent years, when empirical data began to allow …
mostly applied in theoretical models until recent years, when empirical data began to allow …
[HTML][HTML] Mechanisms of mutational robustness in transcriptional regulation
Robustness is the invariance of a phenotype in the face of environmental or genetic change.
The phenotypes produced by transcriptional regulatory circuits are gene expression …
The phenotypes produced by transcriptional regulatory circuits are gene expression …
Mutation bias shapes the spectrum of adaptive substitutions
…, DM McCandlish, JL Payne - Proceedings of the …, 2022 - National Acad Sciences
Evolutionary adaptation often occurs by the fixation of beneficial mutations. This mode of
adaptation can be characterized quantitatively by a spectrum of adaptive substitutions, ie, a …
adaptation can be characterized quantitatively by a spectrum of adaptive substitutions, ie, a …
[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …
[HTML][HTML] Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis
Transition bias, an overabundance of transitions relative to transversions, has been widely
reported among studies of the rates and spectra of spontaneous mutations. However, …
reported among studies of the rates and spectra of spontaneous mutations. However, …
Robustness, evolvability, and the logic of genetic regulation
In gene regulatory circuits, the expression of individual genes is commonly modulated by a
set of regulating gene products, which bind to a gene's cis-regulatory region. This region …
set of regulating gene products, which bind to a gene's cis-regulatory region. This region …
Analysis of a threshold model of social contagion on degree-correlated networks
We analytically determine when a range of abstract social contagion models permit global
spreading from a single seed on degree-correlated undirected random networks. We deduce …
spreading from a single seed on degree-correlated undirected random networks. We deduce …