[HTML][HTML] Evaluation of rapid library preparation protocols for whole genome sequencing based outbreak investigation

…, F Bonfiglio, A Cuénod, J Reist… - Frontiers in public …, 2019 - frontiersin.org
Whole genome sequencing (WGS) has become the new gold standard for bacterial outbreak
investigation, due to the high resolution available for typing. While sequencing is currently …

[HTML][HTML] Evolution, geographic spreading, and demographic distribution of Enterovirus D68

EB Hodcroft, R Dyrdak, C Andrés, A Egli, J Reist… - PLoS …, 2022 - journals.plos.org
Worldwide outbreaks of enterovirus D68 (EV-D68) in 2014 and 2016 have caused serious
respiratory and neurological disease. We collected samples from several European countries …

[HTML][HTML] Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

J Agnetti, HMB Seth-Smith, S Ursich, J Reist… - BMC infectious …, 2019 - Springer
Background The clinical course of Campylobacter infection varies in symptoms and severity
depending on host factors, virulence of the pathogen and initiated therapy. The type VI …

Evaluation of the rapid biochemical β-CARBA™ test for detection of carbapenemase-producing Gram-negative bacteria

V Hinić, J Reist, A Egli - Journal of microbiological methods, 2018 - Elsevier
We evaluated a rapid biochemical screening test β-CARBA™ for detection of Gram-negative
carbapenemase producers. The sensitivity of the test after 30 min incubation was 98.2%, …

[HTML][HTML] ESBL Displace: A Protocol for an Observational Study to Identify Displacing Escherichia coli Strain Candidates from ESBL-Colonized Travel Returners Using …

…, HMB Seth-Smith, O Grüninger, A Gensch, J Reist… - Microbiology …, 2023 - mdpi.com
Introduction: Invading extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-PE),
non-ESBL E. coli, and other bacteria form a complex environment in the gut. The …

Impact of different amino acid substitutions in penicillin-binding protein 3 on beta-lactam susceptibility in Haemophilus influenzae

J Reist, J Linnik, U Schibli, A Egli, V Hinić - bioRxiv, 2019 - biorxiv.org
Purpose Beta-lactam antibiotics in combination with a beta-lactamase inhibitor are the first-line
treatment option for Haemophilus influenzae infections. However, beta-lactamase-…

[HTML][HTML] Two simultaneous cases of disseminated infections with Campylobacter fetus: clinical characteristics and molecular comparison

A Durovic, HMB Seth-Smith… - Clinical …, 2021 - clinicalmicrobiologyandinfection …
Data on the usefulness of whole-genome sequencing (WGS) for invasive Campylobacter
fetus infections are scarce. However, such methods are of great value for clinical and …

Serotype-specific immunity explains the incidence of diseases caused by human enteroviruses

M Pons-Salort, NC Grassly - Science, 2018 - science.org
Human enteroviruses are a major cause of neurological and other diseases. More than 100
serotypes are known that exhibit unexplained complex patterns of incidence, from regular …

Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra

C Weis, M Horn, B Rieck, A Cuénod, A Egli… - …, 2020 - academic.oup.com
… We thank Olivia Grüninger, Josiane Reist, Daniela Lang, Clarisse Straub and Magdalena
Schneider for providing excellent technical support during data extraction of MALDI-TOF mass …

[HTML][HTML] Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical …

A Cuénod, D Wüthrich, HMB Seth-Smith, C Ott… - Genome medicine, 2021 - Springer
Background Klebsiella spp. are opportunistic pathogens which can cause severe infections,
are often multi-drug resistant and are a common cause of hospital-acquired infections. …