User profiles for Juan I. Montoya-Burgos

Juan I. Montoya-Burgos

Department of Genetics and Evolution, University of Geneva
Verified email at unige.ch
Cited by 9463

Optimization of de novo transcriptome assembly from next-generation sequencing data

Y Surget-Groba, JI Montoya-Burgos - Genome research, 2010 - genome.cshlp.org
Transcriptome analysis has important applications in many biological fields. However,
assembling a transcriptome without a known reference remains a challenging task requiring …

Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

X Pochon, JI Montoya-Burgos, B Stadelmann… - Molecular phylogenetics …, 2006 - Elsevier
Symbiotic dinoflagellates belonging to the genus Symbiodinium are found in association
with a wide variety of shallow-water invertebrates and protists dwelling in tropical and …

Historical biogeography of the catfish genus Hypostomus (Siluriformes: Loricariidae), with implications on the diversification of Neotropical ichthyofauna

JI MontoyaBurgos - Molecular Ecology, 2003 - Wiley Online Library
Juan I. Montoya-Burgos began his work on systematics and biogeography of neotropical
catfishes during his PhD work held at the University and the Museum of Natural History of …

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

…, J Taylor, S Nikolaev, JI Montoya-Burgos… - Genome …, 2007 - genome.cshlp.org
A key component of the ongoing ENCODE project involves rigorous comparative sequence
analyses for the initially targeted 1% of the human genome. Here, we present orthologous …

Changes in Hox genes' structure and function during the evolution of the squamate body plan

N Di-Poi, JI Montoya-Burgos, H Miller, O Pourquie… - Nature, 2010 - nature.com
Hox genes are central to the specification of structures along the anterior–posterior body axis
1 , 2 , and modifications in their expression have paralleled the emergence of diversity in …

Phylogeny of the order Zoantharia (Anthozoa, Hexacorallia) based on the mitochondrial ribosomal genes

F Sinniger, JI Montoya-Burgos, P Chevaldonné… - Marine Biology, 2005 - Springer
Zoantharia (or Zoanthidea) is the third largest order of Hexacorallia, characterised by two
rows of tentacles, one siphonoglyph and a colonial way of life. Current systematics of …

Recombination explains isochores in mammalian genomes

JI Montoya-Burgos, P Boursot, N Galtier - Trends in genetics, 2003 - cell.com
The mouse Fxy gene was translocated into the highly recombining pseudoautosomal region
comparatively recently in evolutionary terms. This event resulted in a rapid increase of GC …

Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae)

MC Chiachio, C Oliveira, JI Montoya-Burgos - Molecular Phylogenetics and …, 2008 - Elsevier
The Neotropics possess the greatest freshwater fish diversity of the world, rendering the
study of their evolutionary history extremely challenging. Loricariidae catfishes are one of the …

[HTML][HTML] Early history of mammals is elucidated with the ENCODE multiple species sequencing data

S Nikolaev, JI Montoya-Burgos, EH Margulies… - PLoS …, 2007 - journals.plos.org
Understanding the early evolution of placental mammals is one of the most challenging issues
in mammalian phylogeny. Here, we addressed this question by using the sequence data …

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements

SI Nikolaev, JI Montoya-Burgos… - Proceedings of the …, 2007 - National Acad Sciences
A comprehensive phylogenetic framework is indispensable for investigating the evolution of
genomic features in mammals as a whole, and particularly in humans. Using the ENCODE …