User profiles for Juan Nogales

Juan Nogales

Research Scientist at CSIC
Verified email at cnb.csic.es
Cited by 3440

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

J Nogales, S Gudmundsson… - Proceedings of the …, 2012 - National Acad Sciences
Photosynthesis has recently gained considerable attention for its potential role in the
development of renewable energy sources. Optimizing photosynthetic organisms for biomass or …

MEMOTE for standardized genome-scale metabolic model testing

…, JM Monk, J Nielsen, LK Nielsen, J Nogales… - Nature …, 2020 - nature.com
To the Editor—Reconstructing metabolic reaction networks enables the development of
testable hypotheses of an organism’s metabolism under different conditions 1. State-of-the-art …

[HTML][HTML] A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory

J Nogales, BØ Palsson, I Thiele - BMC systems biology, 2008 - Springer
Background Pseudomonas putida is the best studied pollutant degradative bacteria and is
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of P…

Optimizing genome-scale network reconstructions

J Monk, J Nogales, BO Palsson - Nature biotechnology, 2014 - nature.com
Juan Nogales … Jonathan Monk and Juan Nogales: These authors contributed equally
to this work. … Juan Nogales

Aerobic degradation of aromatic compounds

E Díaz, JI Jiménez, J Nogales - Current opinion in biotechnology, 2013 - Elsevier
Our view on the bacterial responses to the aerobic degradation of aromatic compounds has
been enriched considerably by the current omic methodologies and systems biology …

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

…, A Goñi-Moreno, PI Nikel, J Nogales… - Nucleic Acids …, 2023 - academic.oup.com
The SEVA platform ( https://seva-plasmids.com ) was launched one decade ago, both as a
database (DB) and as a physical repository of plasmid vectors for genetic analysis and …

High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

J Nogales, J Mueller, S Gudmundsson… - Environmental …, 2020 - Wiley Online Library
Genome‐scale reconstructions of metabolism are computational species‐specific knowledge
bases able to compute systemic metabolic properties. We present a comprehensive and …

[HTML][HTML] The metabolic potential of plastics as biotechnological carbon sources–review and targets for the future

…, P Quicker, UT Bornscheuer, A Bardow, J Nogales… - Metabolic …, 2022 - Elsevier
The plastic crisis requires drastic measures, especially for the plastics’ end-of-life. Mixed
plastic fractions are currently difficult to recycle, but microbial metabolism might open new …

[HTML][HTML] Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

H Nagarajan, M Sahin, J Nogales, H Latif… - Microbial cell …, 2013 - Springer
Background The metabolic capabilities of acetogens to ferment a wide range of sugars, to
grow autotrophically on H 2 /CO 2 , and more importantly on synthesis gas (H 2 /CO/CO 2 ) …

Growth phase‐dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome‐wide DNA microarray

…, R Tobes, JI Jiménez, J Nogales… - Environmental …, 2006 - Wiley Online Library
Bacterial transcriptional networks are built on a hierarchy of regulators, on top of which lie the
components of the RNA polymerase (in particular the sigma factors) and the global control …