Beyond native Cas9: manipulating genomic information and function

H Mitsunobu, J Teramoto, K Nishida, A Kondo - Trends in biotechnology, 2017 - cell.com
Clustered regularly interspaced short palindromic repeats (CRISPR)-mediated
manipulation of genomic information is becoming more versatile by combining nuclease-deficient …

Design, synthesis, and testing toward a 57-codon genome

N Ostrov, M Landon, M Guell, G Kuznetsov, J Teramoto… - Science, 2016 - science.org
Recoding—the repurposing of genetic codons—is a powerful strategy for enhancing
genomes with functions not commonly found in nature. Here, we report computational design, …

Leukoaraiosis in relation to prognosis for patients with lacunar infarction.

S Miyao, A Takano, J Teramoto, A Takahashi - Stroke, 1992 - Am Heart Assoc
Close relations between leukoaraiosis detected by computed tomography or magnetic
resonance imaging and stroke, particularly lacunar infarction, have been reported. We studied …

Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing

…, JE Grissom, TL Conkle, TM Shadid, J Teramoto… - MBio, 2014 - Am Soc Microbiol
We analyzed the transcriptome of Escherichia coli K-12 by strand-specific RNA sequencing
at single-nucleotide resolution during steady-state (logarithmic-phase) growth and upon …

Prevalence and features of migraine in Japanese junior high school students aged 12–15 yr

N Ando, S Fujimoto, T Ishikawa, J Teramoto… - Brain and …, 2007 - Elsevier
Migraine is the most common cause of recurrent headache among children and adolescents
resulting in missing of school and disabling their daily life. The purpose of this study is to …

A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions

J Teramoto, SH Yoshimura, K Takeyasu… - Nucleic acids …, 2010 - academic.oup.com
A systematic search was performed for DNA-binding sequences of YgiP, an uncharacterized
transcription factor of Escherichia coli, by using the Genomic SELEX. A total of 688 YgiP-…

The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. coli during anoxia

CJ Lim, SY Lee, J Teramoto, A Ishihama… - Nucleic acids …, 2013 - academic.oup.com
Dan is a transcription factor that regulates the ttd operon encoding tartrate dehydratase.
During anaerobic conditions, its copy number increases by 100-fold, making Dan an abundant …

[PDF][PDF] Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps

…, T Kenmotsu, M Ichikawa, Y Yoshikawa, J Teramoto… - Biophysical journal, 2013 - cell.com
The effects of nucleoid proteins Fis and Dps of Escherichia coli on the higher order structure
of a giant DNA were studied, in which Fis and Dps are known to be expressed mainly in the …

Regulatory roles of pyruvate-sensing two-component system PyrSR (YpdAB) in Escherichia coli K-12

…, T Inaba, H Watanabe, J Teramoto… - FEMS microbiology …, 2019 - academic.oup.com
When the rate of production of metabolites in bacteria exceeds the amounts needed for cell
growth, excess metabolites are secreted into the extracellular environment. Upon entry into …

[HTML][HTML] Transcription Factor SrsR (YgfI) Is a Novel Regulator for the Stress-Response Genes in Stationary Phase in Escherichia coli K-12

I Kobayashi, K Mochizuki, J Teramoto… - International Journal of …, 2022 - mdpi.com
Understanding the functional information of all genes and the biological mechanism based
on the comprehensive genome regulation mechanism is an important task in life science. …