Windowed Granger causal inference strategy improves discovery of gene regulatory networks

JD Finkle, JJ Wu, N Bagheri - Proceedings of the National …, 2018 - National Acad Sciences
Accurate inference of regulatory networks from experimental data facilitates the rapid
characterization and understanding of biological systems. High-throughput technologies can …

[HTML][HTML] Validation of a liquid biopsy assay with molecular and clinical profiling of circulating tumor DNA

JD Finkle, H Boulos, TM Driessen, C Lo… - NPJ Precision …, 2021 - nature.com
Liquid biopsy is a valuable precision oncology tool that is increasingly used as a non-invasive
approach to identify biomarkers, detect resistance mutations, monitor disease burden, and …

Longitudinal shifts of solid tumor and liquid biopsy sequencing concordance in metastatic breast cancer

…, A Piwowarczyk, C Lo, J Schaeffer, JD Finkle… - JCO Precision …, 2022 - ascopubs.org
PURPOSE Tissue-based next-generation sequencing (NGS) in metastatic breast cancer (mBC)
is limited by the inability to noninvasively track tumor evolution. Cell-free DNA (cfDNA) …

[HTML][HTML] ZYG-9ch-TOG promotes the stability of acentrosomal poles via regulation of spindle microtubules in C. elegans oocyte meiosis

…, ER Czajkowski, ID Wolff, NS Divekar, JD Finkle… - PLoS …, 2022 - journals.plos.org
During mitosis, centrosomes serve as microtubule organizing centers that guide the formation
of a bipolar spindle. However, oocytes of many species lack centrosomes; how meiotic …

A systems approach to integrative biology: an overview of statistical methods to elucidate association and architecture

MF Ciaccio, JD Finkle, AY Xue… - … and comparative biology, 2014 - academic.oup.com
An organism’s ability to maintain a desired physiological response relies extensively on how
cellular and molecular signaling networks interpret and react to environmental cues. The …

Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights

JD Finkle, N Bagheri - Bioinformatics, 2019 - academic.oup.com
Motivation To understand the regulatory pathways underlying diseases, studies often
investigate the differential gene expression between genetically or chemically differing cell …

Discovering Regulatory Insights from Gene Expression Dynamics

JD Finkle - 2019 - search.proquest.com
Cells are complex, autonomous machines that integrate many environmental cues to execute
a desired response. Though this property makes cells versatile, it presents significant …

Evaluating enzymatic synthesis of small molecule drugs

M Moura, J Finkle, S Stainbrook, J Greene… - Metabolic …, 2016 - Elsevier
There have been many achievements in applying biochemical synthetic routes to the synthesis
of commodity chemicals. However, most of these endeavors have focused on optimizing …

[HTML][HTML] Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report

HM Namløs, O Zaikova, B Bjerkehagen, D Vodák… - BMC cancer, 2017 - Springer
Background Many patients experience local recurrence or metastases after receiving potentially
curative treatment, and early detection of these events is important for disease control. …

[BOOK][B] Warren Buffett: Investor and Entrepreneur

TA Finkle - 2023 - degruyter.com
Having been a professor at the university level for over thirty years, I want to share with
everyone in the world the knowledge I have learned about one of the most successful …