LNCipedia 5: towards a reference set of human long non-coding RNAs
…, J Anckaert, K Verheggen, J Nuytens… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large class of …
discovery of novel genes, today it has shifted towards functional annotation of this large class of …
The RNA Atlas expands the catalog of human non-coding RNAs
Existing compendia of non-coding RNA (ncRNA) are incomplete, in part because they are
derived almost exclusively from small and polyadenylated RNAs. Here we present a more …
derived almost exclusively from small and polyadenylated RNAs. Here we present a more …
Measurable impact of RNA quality on gene expression results from quantitative PCR
…, K De Preter, S Lefever, J Nuytens… - Nucleic acids …, 2011 - academic.oup.com
Compromised RNA quality is suggested to lead to unreliable results in gene expression studies.
Therefore, assessment of RNA integrity and purity is deemed essential prior to including …
Therefore, assessment of RNA integrity and purity is deemed essential prior to including …
[PDF][PDF] Charting extracellular transcriptomes in the human biofluid RNA atlas
Extracellular RNAs present in biofluids have emerged as potential biomarkers for disease.
Where most studies focus on blood-derived fluids, other biofluids may be more informative. …
Where most studies focus on blood-derived fluids, other biofluids may be more informative. …
[HTML][HTML] Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
RNA profiling has emerged as a powerful tool to investigate the biomarker potential of
human biofluids. However, despite enormous interest in extracellular nucleic acids, RNA …
human biofluids. However, despite enormous interest in extracellular nucleic acids, RNA …
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
The detection of circular RNA molecules (circRNAs) is typically based on short-read RNA
sequencing data processed using computational tools. Numerous such tools have been …
sequencing data processed using computational tools. Numerous such tools have been …
[HTML][HTML] The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival
…, K Vanderheyden, J Anckaert, N Yigit, J Nuytens… - Oncogene, 2022 - nature.com
Long non-coding RNAs (lncRNAs) can exhibit cell-type and cancer-type specific expression
profiles, making them highly attractive as therapeutic targets. Pan-cancer RNA sequencing …
profiles, making them highly attractive as therapeutic targets. Pan-cancer RNA sequencing …
[PDF][PDF] Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
…, J De Wilde, J Anckaert, K Durinck, J Nuytens… - NAR …, 2022 - academic.oup.com
While cell-free DNA (cfDNA) is widely being investigated, free circulating RNA (extracellular
RNA, exRNA) has the potential to improve cancer therapy response monitoring and …
RNA, exRNA) has the potential to improve cancer therapy response monitoring and …
Patient-specific alterations in blood plasma cfRNA profiles enable accurate classification of cancer patients and controls
…, P Decruyenaere, K Schoofs, J Anckaert, J Nuytens… - medRxiv, 2023 - medrxiv.org
Circulating nucleic acids in blood plasma form an attractive resource to study human health
and disease. Here, we applied mRNA capture sequencing of blood plasma cell-free RNA …
and disease. Here, we applied mRNA capture sequencing of blood plasma cell-free RNA …
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
The use of blood-based extracellular RNA (cell-free RNA; exRNA) as clinical biomarker
requires the implementation of a validated procedure for sample collection, processing, and …
requires the implementation of a validated procedure for sample collection, processing, and …