User profiles for K. Ellrott
Kyle EllrottOregon Health and Science University Verified email at ohsu.edu Cited by 41093 |
[HTML][HTML] The cancer genome atlas pan-cancer analysis project
The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large
numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and …
numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and …
[HTML][HTML] Scalable open science approach for mutation calling of tumor exomes using multiple genomic pipelines
The Cancer Genome Atlas (TCGA) cancer genomics dataset includes over 10,000 tumor-normal
exome pairs across 33 different cancer types, in total >400 TB of raw data files requiring …
exome pairs across 33 different cancer types, in total >400 TB of raw data files requiring …
[PDF][PDF] GA4GH: International policies and standards for data sharing across genomic research and healthcare
The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical
advances by enabling the responsible sharing of clinical and genomic data through both …
advances by enabling the responsible sharing of clinical and genomic data through both …
[HTML][HTML] Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
… At each rank k, the gray dot indicates performance of the ensemble algorithms ranking 1
to k, and the colored dot indicates the performance of the algorithm at that rank. …
to k, and the colored dot indicates the performance of the algorithm at that rank. …
Mechanisms of streptomycin resistance: selection of mutations in the 16S rRNA gene conferring resistance
…, YG Kidan, T Prammananan, K Ellrott… - Antimicrobial agents …, 2001 - Am Soc Microbiol
Chromosomally acquired streptomycin resistance is frequently due to mutations in the gene
encoding the ribosomal protein S12,rpsL. The presence of several rRNA operons (rrn) and a …
encoding the ribosomal protein S12,rpsL. The presence of several rRNA operons (rrn) and a …
[PDF][PDF] Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL;
https://anvilproject.org) was developed to address a widespread community need for a …
https://anvilproject.org) was developed to address a widespread community need for a …
The UCSC cancer genomics browser: update 2013
The UCSC Cancer Genomics Browser ( https://genome-cancer.ucsc.edu/ ) is a set of web-based
tools to display, investigate and analyse cancer genomics data and its associated …
tools to display, investigate and analyse cancer genomics data and its associated …
[HTML][HTML] A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
…, C del Vecchio Fitz, BA Pitel, OU Sezerman, K Ellrott… - Nature …, 2020 - nature.com
Precision oncology relies on accurate discovery and interpretation of genomic variants,
enabling individualized diagnosis, prognosis and therapy selection. We found that six prominent …
enabling individualized diagnosis, prognosis and therapy selection. We found that six prominent …
[HTML][HTML] Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas
… LO, KE and AAM wrote the manuscript with assistance from CK, SHF, JS and HLLO, KE
and CW created the visuals for the manuscript. LO and KE coordinated data aggregation and …
and CW created the visuals for the manuscript. LO and KE coordinated data aggregation and …
TumorMap: exploring the molecular similarities of cancer samples in an interactive portal
Vast amounts of molecular data are being collected on tumor samples, which provide
unique opportunities for discovering trends within and between cancer subtypes. Such cross-…
unique opportunities for discovering trends within and between cancer subtypes. Such cross-…