User profiles for K. Van den Berge
Koen Van den BergeJ&J Innovative Medicine Verified email at berkeley.edu Cited by 2885 |
RNA sequencing data: hitchhiker's guide to expression analysis
K Van den Berge, KM Hembach… - Annual Review of …, 2019 - annualreviews.org
… While very fast, these k-mer-based approaches do not retain the coherence of the k-mers
along a read, which can reduce specificity, and they cannot easily estimate certain aspects of …
along a read, which can reduce specificity, and they cannot easily estimate certain aspects of …
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
…, C Weinreb, M Lipovsek, K Van den Berge… - Science …, 2020 - science.org
Altered olfactory function is a common symptom of COVID-19, but its etiology is unknown. A
key question is whether SARS-CoV-2 (CoV-2) – the causal agent in COVID-19 – affects …
key question is whether SARS-CoV-2 (CoV-2) – the causal agent in COVID-19 – affects …
Cognitive diagnostic error in internal medicine
K van den Berge, S Mamede - European journal of internal medicine, 2013 - Elsevier
Medical error poses an important healthcare burden and a challenge for physicians and
policy makers worldwide. Diagnostic error accounts for a substantial fraction of all medical …
policy makers worldwide. Diagnostic error accounts for a substantial fraction of all medical …
[HTML][HTML] Trajectory-based differential expression analysis for single-cell sequencing data
… (K − 1) matrix, where each column corresponds to a contrast between two consecutive β glk
and β gl(k+1) and where we have K − 1 contrasts per lineage for a total of L (K − 1) contrasts. …
and β gl(k+1) and where we have K − 1 contrasts per lineage for a total of L (K − 1) contrasts. …
Effect of availability bias and reflective reasoning on diagnostic accuracy among internal medicine residents
Context Diagnostic errors have been associated with bias in clinical reasoning. Empirical
evidence on the cognitive mechanisms underlying biases and effectiveness of educational …
evidence on the cognitive mechanisms underlying biases and effectiveness of educational …
[HTML][HTML] A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Single-cell transcriptomics can provide quantitative molecular signatures for large, unbiased
samples of the diverse cell types in the brain 1 , 2 – 3 . With the proliferation of multi-omics …
samples of the diverse cell types in the brain 1 , 2 – 3 . With the proliferation of multi-omics …
[HTML][HTML] Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
… computed with the number of unknown covariates K=0, ie, no latent variables were inferred.
To cluster the real datasets, we inferred an optimal choice of K using the AIC (Additional file 1…
To cluster the real datasets, we inferred an optimal choice of K using the AIC (Additional file 1…
Polar lake microbiomes have distinct evolutionary histories
Toward the poles, life on land is increasingly dominated by microorganisms, yet the evolutionary
origin of polar microbiomes remains poorly understood. Here, we use metabarcoding of …
origin of polar microbiomes remains poorly understood. Here, we use metabarcoding of …
[HTML][HTML] stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage
RNA sequencing studies with complex designs and transcript-resolution analyses involve
multiple hypotheses per gene; however, conventional approaches fail to control the false …
multiple hypotheses per gene; however, conventional approaches fail to control the false …
Do patients' disruptive behaviours influence the accuracy of a doctor's diagnosis? A randomised experiment
…, T Van Gog, SCE Schuit, K Van den Berge… - BMJ quality & …, 2017 - qualitysafety.bmj.com
Background Literature suggests that patients who display disruptive behaviours in the
consulting room fuel negative emotions in doctors. These emotions, in turn, are said to cause …
consulting room fuel negative emotions in doctors. These emotions, in turn, are said to cause …