User profiles for Kalli Kappel
Kalli KappelHHMI Hanna Gray Fellow, Broad Institute of MIT and Harvard Verified email at broadinstitute.org Cited by 3032 |
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures
The discovery and design of biologically important RNA molecules is outpacing three-dimensional
structural characterization. Here, we demonstrate that cryo-electron microscopy can …
structural characterization. Here, we demonstrate that cryo-electron microscopy can …
Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution
Single-particle cryogenic electron microscopy (cryo-EM) has become a standard technique
for determining protein structures at atomic resolution 1 , 2 – 3 . However, cryo-EM studies of …
for determining protein structures at atomic resolution 1 , 2 – 3 . However, cryo-EM studies of …
De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes
Increasingly, cryo-electron microscopy (cryo-EM) is used to determine the structures of RNA–protein
assemblies, but nearly all maps determined with this method have biologically …
assemblies, but nearly all maps determined with this method have biologically …
[PDF][PDF] Sampling native-like structures of RNA-protein complexes through Rosetta folding and docking
RNA-protein complexes underlie numerous cellular processes including translation, splicing,
and posttranscriptional regulation of gene expression. The structures of these complexes …
and posttranscriptional regulation of gene expression. The structures of these complexes …
The Rosetta all-atom energy function for macromolecular modeling and design
Over the past decade, the Rosetta biomolecular modeling suite has informed diverse
biological questions and engineering challenges ranging from interpretation of low-resolution …
biological questions and engineering challenges ranging from interpretation of low-resolution …
Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report
here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
A unified mechanism for intron and exon definition and back-splicing
The molecular mechanisms of exon definition and back-splicing are fundamental unanswered
questions in pre-mRNA splicing. Here we report cryo-electron microscopy structures of …
questions in pre-mRNA splicing. Here we report cryo-electron microscopy structures of …
Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor
Elucidating the detailed process of ligand binding to a receptor is pharmaceutically
important for identifying druggable binding sites. With the ability to provide atomistic detail, …
important for identifying druggable binding sites. With the ability to provide atomistic detail, …
[HTML][HTML] Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution
Specimens below 50 kDa have generally been considered too small to be analyzed by
single-particle cryo-electron microscopy (cryo-EM). The high flexibility of pure RNAs makes it …
single-particle cryo-electron microscopy (cryo-EM). The high flexibility of pure RNAs makes it …