User profiles for Kanari Lida

Lida Kanari

École polytechnique fédérale de Lausanne
Verified email at epfl.ch
Cited by 2094

[PDF][PDF] Reconstruction and simulation of neocortical microcircuitry

…, E Hay, T Heinis, JB Hernando, M Hines, L Kanari… - Cell, 2015 - cell.com
We present a first-draft digital reconstruction of the microcircuitry of somatosensory cortex of
juvenile rat. The reconstruction uses cellular and synaptic organizing principles to …

[HTML][HTML] A topological representation of branching neuronal morphologies

L Kanari, P Dłotko, M Scolamiero, R Levi, J Shillcock… - Neuroinformatics, 2018 - Springer
Many biological systems consist of branching structures that exhibit a wide variety of shapes.
Our understanding of their systematic roles is hampered from the start by the lack of a …

[HTML][HTML] The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex

…, JW Graham, JB Hernando, L Kanari… - Frontiers in neural …, 2015 - frontiersin.org
We have established a multi-constraint, data-driven process to digitally reconstruct, and
simulate prototypical neocortical microcircuitry, using sparse experimental data. We applied this …

[HTML][HTML] A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes

G Colombo, RJA Cubero, L Kanari, A Venturino… - Nature …, 2022 - nature.com
Environmental cues influence the highly dynamic morphology of microglia. Strategies to
characterize these changes usually involve user-selected morphometric features, which …

Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex

…, EJ Mertens, N Barros-Zulaica, L Kanari… - Cerebral …, 2023 - academic.oup.com
Synaptic transmission constitutes the primary mode of communication between neurons. It
is extensively studied in rodent but not human neocortex. We characterized synaptic …

Comprehensive morpho-electrotonic analysis shows 2 distinct classes of L2 and L3 pyramidal neurons in human temporal cortex

Y Deitcher, G Eyal, L Kanari, MB Verhoog… - Cerebral …, 2017 - academic.oup.com
There have been few quantitative characterizations of the morphological, biophysical, and
cable properties of neurons in the human neocortex. We employed feature-based statistical …

Objective morphological classification of neocortical pyramidal cells

L Kanari, S Ramaswamy, Y Shi, S Morand… - Cerebral …, 2019 - academic.oup.com
A consensus on the number of morphologically different types of pyramidal cells (PCs) in the
neocortex has not yet been reached, despite over a century of anatomical studies, due to …

Digital reconstruction of the neuro-glia-vascular architecture

E Zisis, D Keller, L Kanari, A Arnaudon… - Cerebral …, 2021 - academic.oup.com
Astrocytes connect the vasculature to neurons mediating the supply of nutrients and
biochemicals. They are involved in a growing number of physiological and pathophysiological …

[HTML][HTML] From trees to barcodes and back again: theoretical and statistical perspectives

L Kanari, A Garin, K Hess - Algorithms, 2020 - mdpi.com
Methods of topological data analysis have been successfully applied in a wide range of fields
to provide useful summaries of the structure of complex data sets in terms of topological …

Modeling and simulation of rat non-barrel somatosensory cortex. part i: Modeling anatomy

…, JB Hernando, J Herttuainen, JB Isbister, L Kanari… - bioRxiv, 2022 - biorxiv.org
The function of the neocortex is fundamentally determined by its repeating microcircuit motif,
but also by its rich, hierarchical, interregional structure with a highly specific laminar …