User profiles for Karen Sachs
Karen SachsNext Generation Analytics, Modulo Bio, Inc., Answer ALS, Massachusetts Institute of … Verified email at mit.edu Cited by 8033 |
Causal protein-signaling networks derived from multiparameter single-cell data
Machine learning was applied for the automated derivation of causal influences in cellular
signaling networks. This derivation relied on the simultaneous measurement of multiple …
signaling networks. This derivation relied on the simultaneous measurement of multiple …
Bayesian network approach to cell signaling pathway modeling
The modeling of cellular signaling pathways is an emerging field. Sachs et al. illustrate the
application of Bayesian networks to an example cellular pathway involving the activation of …
application of Bayesian networks to an example cellular pathway involving the activation of …
[PDF][PDF] The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations
The Library of Integrated Network-Based Cellular Signatures (LINCS) is an NIH Common
Fund program that catalogs how human cells globally respond to chemical, genetic, and …
Fund program that catalogs how human cells globally respond to chemical, genetic, and …
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
…, OI Ornatsky, RS Balderas, SK Plevritis, K Sachs… - Science, 2011 - science.org
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis.
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …
We used single-cell “mass cytometry” to examine healthy human bone marrow, measuring …
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
The ability to analyze multiple single-cell parameters is critical for understanding cellular
heterogeneity. Despite recent advances in measurement technology, methods for analyzing …
heterogeneity. Despite recent advances in measurement technology, methods for analyzing …
Normalization of mass cytometry data with bead standards
Mass cytometry uses atomic mass spectrometry combined with isotopically pure reporter
elements to currently measure as many as 40 parameters per single cell. As with any …
elements to currently measure as many as 40 parameters per single cell. As with any …
Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators
Mass cytometry facilitates high-dimensional, quantitative analysis of the effects of bioactive
molecules on human samples at single-cell resolution, but instruments process only one …
molecules on human samples at single-cell resolution, but instruments process only one …
[HTML][HTML] Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
Answer ALS is a biological and clinical resource of patient-derived, induced pluripotent
stem (iPS) cell lines, multi-omic data derived from iPS neurons and longitudinal clinical and …
stem (iPS) cell lines, multi-omic data derived from iPS neurons and longitudinal clinical and …
Single-cell gene expression analyses reveal distinct self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia
These findings define and functionally validate a self-renewal gene profile of leukemia stem
cells at the single-cell level and demonstrate that self-renewal and proliferation are distinct …
cells at the single-cell level and demonstrate that self-renewal and proliferation are distinct …
[PDF][PDF] An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients
…, NL Patel-Murray, J Pham, D Ramamoorthy, K Sachs… - Iscience, 2021 - cell.com
Neurodegenerative diseases are challenging for systems biology because of the lack of
reliable animal models or patient samples at early disease stages. Induced pluripotent stem …
reliable animal models or patient samples at early disease stages. Induced pluripotent stem …