User profiles for Katherine L. Petrie
Katherine L. PetrieUC San Diego, ELSI Verified email at elsi.jp Cited by 208 |
Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance
The evolution of antibiotic-resistant bacteria threatens to become the leading cause of worldwide
mortality. This crisis has renewed interest in the practice of phage therapy. Yet, bacteria’…
mortality. This crisis has renewed interest in the practice of phage therapy. Yet, bacteria’…
Destabilizing mutations encode nongenetic variation that drives evolutionary innovation
Evolutionary innovations are often achieved by repurposing existing genes to perform new
functions; however, the mechanisms enabling the transition from old to new remain …
functions; however, the mechanisms enabling the transition from old to new remain …
Limits of neutral drift: lessons from the in vitro evolution of two ribozymes
KL Petrie, GF Joyce - Journal of molecular evolution, 2014 - Springer
The relative contributions of adaptive selection and neutral drift to genetic change are unknown
but likely depend on the inherent abundance of functional genotypes in sequence space …
but likely depend on the inherent abundance of functional genotypes in sequence space …
Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature
Viral gain-of-function mutations frequently evolve during laboratory experiments. Whether
the specific mutations that evolve in the lab also evolve in nature and whether they have the …
the specific mutations that evolve in the lab also evolve in nature and whether they have the …
Deep sequencing analysis of mutations resulting from the incorporation of dNTP analogs
KL Petrie, GF Joyce - Nucleic acids research, 2010 - academic.oup.com
Next-generation DNA sequencing technology was used to score >100 000 mutations resulting
from exposure of a nucleic acid template to a mutagenic dNTP analog during a single …
from exposure of a nucleic acid template to a mutagenic dNTP analog during a single …
[HTML][HTML] There're CRISPRs in My Yogurt: A Discovery-Based CURE at the Intersection of Industrial Food Production and the Human Microbiome
KL Petrie - Frontiers in microbiology, 2020 - frontiersin.org
Support for undergraduate laboratory education based on a CURE (Course-based Undergraduate
Research Experience) model is more widespread than ever. By giving students the …
Research Experience) model is more widespread than ever. By giving students the …
Bacteriophage lambda overcomes a perturbation in its host–viral genetic network through mutualism and evolution of life history traits
An important driver of evolution in viruses is natural selection to optimize the use of their hosts’
genetic network. To learn how viruses respond to this pressure, we disrupted the genetic …
genetic network. To learn how viruses respond to this pressure, we disrupted the genetic …
[BOOK][B] Modeling Evolution In Vitro: Mutagenesis, Neutral Drift, and Fitness Landscapes
KL Petrie - 2014 - search.proquest.com
In the 154 years since Darwin proposed a mechanism for evolution by natural selection 1,
advances in theory and molecular biology have revealed that evolutionary outcomes can be …
advances in theory and molecular biology have revealed that evolutionary outcomes can be …
Viral gain-of-function experiments uncover residues under diversifying selection in nature
R Maddamsetti, DT Johnson, SJ Spielman, KL Petrie… - bioRxiv, 2018 - biorxiv.org
Viral gain-of-function mutations are commonly observed in the laboratory; however, it is
unknown whether those mutations also evolve in nature. We identify two key residues in the host …
unknown whether those mutations also evolve in nature. We identify two key residues in the host …
Identification of MLKL membrane translocation as a checkpoint in necroptotic cell death using Monobodies
EJ Petrie, RW Birkinshaw, A Koide… - Proceedings of the …, 2020 - National Acad Sciences
The necroptosis cell death pathway has been implicated in host defense and in the pathology
of inflammatory diseases. While phosphorylation of the necroptotic effector pseudokinase …
of inflammatory diseases. While phosphorylation of the necroptotic effector pseudokinase …