User profiles for Katja Schwartz

Katja Schwartz

Stanford University
Verified email at stanford.edu
Cited by 2807

[HTML][HTML] GC-content normalization for RNA-Seq data

D Risso, K Schwartz, G Sherlock, S Dudoit - BMC bioinformatics, 2011 - Springer
Background Transcriptome sequencing (RNA-Seq) has become the assay of choice for high-throughput
studies of gene expression. However, as is the case with microarrays, major …

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

…, JD Buenrostro, SK Denny, K Schwartz… - Genome …, 2015 - genome.cshlp.org
Transcription factors canonically bind nucleosome-free DNA, making the positioning of
nucleosomes within regulatory regions crucial to the regulation of gene expression. Using the …

“Michael can't read!” Teachers' gender stereotypes and boys' reading self-concept.

J Retelsdorf, K Schwartz, F Asbrock - Journal of educational …, 2015 - psycnet.apa.org
According to expectancy-value theory, the gender stereotypes of significant others such as
parents, peers, or teachers affect students’ competence beliefs, values, and achievement-…

[HTML][HTML] Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae

JW Wenger, K Schwartz, G Sherlock - PLoS genetics, 2010 - journals.plos.org
Fermentation of xylose is a fundamental requirement for the efficient production of ethanol
from lignocellulosic biomass sources. Although they aggressively ferment hexoses, it has long …

BIM1 Encodes a Microtubule-binding Protein in Yeast

K Schwartz, K Richards, D Botstein - Molecular biology of the cell, 1997 - Am Soc Cell Biol
A previously uncharacterized yeast gene (YER016w) that we have named BIM1 (binding to
microtubules) was obtained from a two-hybrid screen of a yeast cDNA library using as bait …

Perspective taking as a means to overcome motivational barriers in negotiations: When putting oneself into the opponent's shoes helps to walk toward agreements.

…, J Hüffmeier, DD Loschelder, K Schwartz… - Journal of personality …, 2011 - psycnet.apa.org
Previous negotiation research predominantly focused on psychological factors that lead to
suboptimal compromises as opposed to integrative agreements. Few studies systematically …

[HTML][HTML] Gene flow contributes to diversification of the major fungal pathogen Candida albicans

…, G Laval, C Bouchier, L Ma, K Schwartz… - Nature …, 2018 - nature.com
Elucidating population structure and levels of genetic diversity and recombination is necessary
to understand the evolution and adaptation of species. Candida albicans is the second …

[HTML][HTML] Assembly of a phased diploid Candida albicansgenome facilitates allele-specific measurements and provides a simple model for repeat and indel structure

D Muzzey, K Schwartz, JS Weissman, G Sherlock - Genome biology, 2013 - Springer
Background Candida albicans is a ubiquitous opportunistic fungal pathogen that afflicts
immunocompromised human hosts. With rare and transient exceptions the yeast is diploid, yet …

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis

…, SR Engel, EL Hong, L Issel‐Tarver, K Schwartz… - Yeast, 2006 - Wiley Online Library
The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the
simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has …

Structure–function relationships in yeast tubulins

…, KR Anders, E Nogales, K Schwartz… - Molecular biology of …, 2000 - Am Soc Cell Biol
A comprehensive set of clustered charged-to-alanine mutations was generated that
systematically alter TUB1, the major α-tubulin gene of Saccharomyces cerevisiae. A variety of …