User profiles for Keitaro Yamashita
Keitaro YamashitaMRC Laboratory of Molecular Biology Verified email at mrc-lmb.cam.ac.uk Cited by 6913 |
Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses
…, H Murakami, Y Nakajima, T Shimizu, K Yamashita… - Nature, 2015 - nature.com
Photosynthesis converts light energy into biologically useful chemical energy vital to life on
Earth. The initial reaction of photosynthesis takes place in photosystem II (PSII), a 700-…
Earth. The initial reaction of photosynthesis takes place in photosystem II (PSII), a 700-…
Light-induced structural changes and the site of O= O bond formation in PSII caught by XFEL
…, M Kubo, Y Nakajima, T Nakane, K Yamashita… - Nature, 2017 - nature.com
Photosystem II (PSII) is a huge membrane-protein complex consisting of 20 different subunits
with a total molecular mass of 350 kDa for a monomer. It catalyses light-driven water …
with a total molecular mass of 350 kDa for a monomer. It catalyses light-driven water …
[HTML][HTML] The CCP4 suite: integrative software for macromolecular crystallography
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …
with a mission to develop, test, distribute and promote software for macromolecular …
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser
M Suga, F Akita, K Yamashita, Y Nakajima, G Ueno… - Science, 2019 - science.org
Photosynthetic water oxidation is catalyzed by the Mn 4 CaO 5 cluster of photosystem II (PSII)
with linear progression through five S-state intermediates (S 0 to S 4 ). To reveal the …
with linear progression through five S-state intermediates (S 0 to S 4 ). To reveal the …
[HTML][HTML] Recent developments in CrystFEL
…, T Nakane, A Tolstikova, K Yamashita… - Journal of applied …, 2016 - scripts.iucr.org
CrystFEL is a suite of programs for processing data from `serial crystallography' experiments,
which are usually performed using X-ray free-electron lasers (FELs) but also increasingly …
which are usually performed using X-ray free-electron lasers (FELs) but also increasingly …
Structural basis for Na+ transport mechanism by a light-driven Na+ pump
…, H Kunitomo, J Ito, S Yoshizawa, K Yamashita… - Nature, 2015 - nature.com
Krokinobacter eikastus rhodopsin 2 (KR2) is the first light-driven Na + pump discovered,
and is viewed as a potential next-generation optogenetics tool. Since the positively charged …
and is viewed as a potential next-generation optogenetics tool. Since the positively charged …
[HTML][HTML] KAMO: towards automated data processing for microcrystals
K Yamashita, K Hirata, M Yamamoto - … Crystallographica Section D …, 2018 - scripts.iucr.org
In protein microcrystallography, radiation damage often hampers complete and high-resolution
data collection from a single crystal, even under cryogenic conditions. One promising …
data collection from a single crystal, even under cryogenic conditions. One promising …
[PDF][PDF] Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine
…, E Thadhani, JM Paggi, TE Matsui, K Yamashita… - Cell, 2022 - cell.com
ChRmine, a recently discovered pump-like cation-conducting channelrhodopsin, exhibits
puzzling properties (large photocurrents, red-shifted spectrum, and extreme light sensitivity) …
puzzling properties (large photocurrents, red-shifted spectrum, and extreme light sensitivity) …
Crystal structure of the octameric pore of staphylococcal γ-hemolysin reveals the β-barrel pore formation mechanism by two components
K Yamashita, Y Kawai, Y Tanaka… - Proceedings of the …, 2011 - National Acad Sciences
Staphylococcal γ-hemolysin is a bicomponent pore-forming toxin composed of LukF and
Hlg2. These proteins are expressed as water-soluble monomers and then assemble into the …
Hlg2. These proteins are expressed as water-soluble monomers and then assemble into the …
[HTML][HTML] Cryo-EM single-particle structure refinement and map calculation using Servalcat
In 2020, cryo-EM single-particle analysis achieved true atomic resolution thanks to
technological developments in hardware and software. The number of high-resolution …
technological developments in hardware and software. The number of high-resolution …