[PDF][PDF] Signal integration by shadow enhancers and enhancer duplications varies across the Drosophila embryo

C Scholes, KM Biette, TT Harden, AH DePace - Cell Reports, 2019 - cell.com
Transcription of developmental genes is controlled by multiple enhancers. Frequently, more
than one enhancer can activate transcription from the same promoter in the same cells. How …

Initial results from a dose finding study of TNO155, a SHP2 inhibitor, in adults with advanced solid tumors.

…, H Minami, N Steeghs, T Hengelage, E Tan, K Biette… - 2021 - ascopubs.org
3005 Background: SHP2 transduces signals from activated receptor tyrosine kinases to
downstream pathways including MAPK. TNO155 is a selective, allosteric, oral inhibitor of SHP2. …

Transmembrane substrate determinants for γ-secretase processing of APP CTFβ

MA Fernandez, KM Biette, G Dolios, D Seth… - Biochemistry, 2016 - ACS Publications
The amyloid β-peptide (Aβ) of Alzheimer’s disease (AD) is generated by proteolysis within
the transmembrane domain (TMD) of a C-terminal fragment of the amyloid β protein-precursor …

[HTML][HTML] Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos

…, MDJ Bragdon, ECG Pym, KM Biette… - PLoS …, 2018 - journals.plos.org
Hunchback is a bifunctional transcription factor that can activate and repress gene expression
in Drosophila development. We investigated the regulatory DNA sequence features that …

Hypoxia drives transient site-specific copy gain and drug-resistant gene expression

JC Black, E Atabakhsh, J Kim, KM Biette… - Genes & …, 2015 - genesdev.cshlp.org
Copy number heterogeneity is a prominent feature within tumors. The molecular basis for
this heterogeneity remains poorly characterized. Here, we demonstrate that hypoxia induces …

[PDF][PDF] Yearly planning meetings: individualized development plans aren't just more paperwork

…, J Estrada, J Park, MDJ Bragdon, FL Rivera, KM Biette… - Molecular cell, 2015 - cell.com
The National Institutes of Health (NIH) encourages trainees to make Individualized Development
Plans to help them prepare for academic and nonacademic careers. We describe our …

[PDF][PDF] Transcriptional kinetic synergy: A complex landscape revealed by integrating modeling and synthetic biology

R Martinez-Corral, M Park, KM Biette, D Friedrich… - Cell systems, 2023 - cell.com
Transcription factors (TFs) control gene expression, often acting synergistically. Classical
thermodynamic models offer a biophysical explanation for synergy based on binding …

[PDF][PDF] Quantitative measurement and thermodynamic modeling of fused enhancers support a two-tiered mechanism for interpreting regulatory DNA

MAH Samee, T Lydiard-Martin, KM Biette, BJ Vincent… - Cell reports, 2017 - cell.com
Computational models of enhancer function generally assume that transcription factors (TFs)
exert their regulatory effects independently, modeling an enhancer as a "bag of sites." …

[PDF][PDF] Extracellular Vesicle-Based Biomarker Assay for the Detection of Early-Stage Ovarian Cancer

…, IO Zabroski, S Banerjee, D Gusenleitner, KM Biette… - J. Clin Oncol, 2022 - mercybio.com
METHODS• Assess the efficacy of co-localized biomarkers on EVs in discriminating between
normal healthy samples and patients with benign adnexal masses from early HGSOC …

[HTML][HTML] Semi-automated hydrophobic interaction chromatography column scouting used in the two-step purification of recombinant green fluorescent protein

OJ Stone, KM Biette, PJM Murphy - Plos one, 2014 - journals.plos.org
Background Hydrophobic interaction chromatography (HIC) most commonly requires experimental
determination (ie, scouting) in order to select an optimal chromatographic medium for …