[HTML][HTML] SMAP is a pipeline for sample matching in proteogenomics

L Li, M Niu, A Erickson, J Luo, K Rowbotham… - Nature …, 2022 - nature.com
The integration of genomics and proteomics data (proteogenomics) holds the promise of
furthering the in-depth understanding of human disease. However, sample mix-up is a …

Comparing a new method for mapping nucleosomes in simian virus 40 chromatin to standard procedures

B Milavetz, J Haugen, K Rowbotham - Epigenetics, 2021 - Taylor & Francis
The location of nucleosomes in chromatin significantly impacts many biological processes
including DNA replication, repair, and gene expression. A number of techniques have been …

[HTML][HTML] Early in an SV40 infection, histone modifications correlate with the presence or absence of RNAPII and direction of transcription

K Rowbotham, B Hanson, J Haugen, B Milavetz - Virology, 2022 - Elsevier
Since epigenetic regulation seemed likely to be involved in SV40 early transcription
following infection, we have analyzed the organization of nucleosomes carrying histone …

[HTML][HTML] Differential SP1 interactions in SV40 chromatin from virions and minichromosomes

K Rowbotham, J Haugen, B Milavetz - Virology, 2020 - Elsevier
SP1 binding in SV40 chromatin in vitro and in vivo was characterized in order to better
understand its role during the initiation of early transcription. We observed that chromatin from …

Mapping Nucleosome Location Using FS-Seq

B Milavetz, B Hanson, K Rowbotham… - … Accessibility: Methods and …, 2023 - Springer
The organization of nucleosomes in eukaryotic chromatin is thought to play a critical role in
the regulation of the biological function of the chromatin. Because of this potential role in …

Mapping the Location of Nucleosomes in Simian Virus 40 Chromatin Using the New England Biolabs FS Library Prep Kit

B Milavetz, J Haugen, K Rowbotham - bioRxiv, 2020 - biorxiv.org
The location of nucleosomes in chromatin significantly impacts many biological processes
including DNA replication, repair and gene expression. A number of techniques have been …

Building the Path to Early Alzheimer's Prediction Using Machine Learning

K Rowbotham, L Li, X Wang - 2021 - commons.und.edu
Results Discussion Alzheimer’s Disease (AD) is the most common form of dementia and
one of the most prominent challenges of precision healthcare is early identification of AD. To …

Nucleosome sliding, histone modifications, and the epigenetic regulation of the Simian Virus 40 life cycle

B Milavetz, K Rowbotham, J Haugen… - The FASEB …, 2020 - Wiley Online Library
We have recently shown that at late times in an SV40 infection a nucleosome containing
modified histones is positioned over the enhancer region consistent with repression of early …

Quantitative sensory testing: report of the Therapeutics and Technology Assessment Subcommittee of the American Academy of Neurology

…, JC Arezzo, DR Cornblath, MJ Giuliani, JC Kincaid… - Neurology, 2003 - AAN Enterprises
… Giuliani), Wyeth-Ayerst, Collegeville, PA; Department of Neurology (JC Kincaid), University
of Indiana School of Medicine, Indianapolis; Department of Neurology (Dr. Ochoa), University …

Genome-Wide Analysis of Methylome in the Mouse Brain using Long-Read Sequencing Technology

Z Even, H Huang, R Mathur, X Wang - 2021 - commons.und.edu
… • A special thanks to all my peers in the Xusheng Wang Laboratory: He Huang, Ling Li,
Kincaid Rowbotham, Alyssa Erickson, and the UND Genomics Core for performing the DNA …