[HTML][HTML] Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates

Y Hara, K Yamaguchi, K Onimaru, M Kadota… - Nature ecology & …, 2018 - nature.com
Modern cartilaginous fishes are divided into elasmobranchs (sharks, rays and skates) and
chimaeras, and the lack of established whole-genome sequences for the former has …

Biomolecular condensates in cancer biology

HI Suzuki, K Onimaru - Cancer Science, 2022 - Wiley Online Library
Understanding the characteristics of cancer cells is essential for the development of
improved diagnosis and therapeutics. From a gene regulation perspective, the super‐enhancer …

[HTML][HTML] The fin-to-limb transition as the re-organization of a Turing pattern

K Onimaru, L Marcon, M Musy, M Tanaka… - Nature …, 2016 - nature.com
A Turing mechanism implemented by BMP, SOX9 and WNT has been proposed to control
mouse digit patterning. However, its generality and contribution to the morphological diversity …

[HTML][HTML] Development and evolution of the lateral plate mesoderm: comparative analysis of amphioxus and lamprey with implications for the acquisition of paired fins

K Onimaru, E Shoguchi, S Kuratani, M Tanaka - Developmental biology, 2011 - Elsevier
Possession of paired appendages is regarded as a novelty that defines crown gnathostomes
and allows sophisticated behavioral and locomotive patterns. During embryonic …

A shift in anterior–posterior positional information underlies the fin-to-limb evolution

K Onimaru, S Kuraku, W Takagi, S Hyodo, J Sharpe… - Elife, 2015 - elifesciences.org
10.7554/eLife.07048.001 The pectoral fins of ancestral fishes had multiple proximal elements
connected to their pectoral girdles. During the fin-to-limb transition, anterior proximal …

[HTML][HTML] Heterochronic Shift in Hox-Mediated Activation of Sonic hedgehog Leads to Morphological Changes during Fin Development

K Sakamoto, K Onimaru, K Munakata, N Suda… - PloS one, 2009 - journals.plos.org
We explored the molecular mechanisms of morphological transformations of vertebrate
paired fin/limb evolution by comparative gene expression profiling and functional analyses. In …

[HTML][HTML] Spatial regulation by multiple Gremlin1 enhancers provides digit development with cis-regulatory robustness and evolutionary plasticity

…, KA Peterson, R Reinhardt, K Onimaru… - Nature …, 2021 - nature.com
Precise cis-regulatory control of gene expression is essential for normal embryogenesis and
tissue development. The BMP antagonist Gremlin1 (Grem1) is a key node in the signalling …

A staging table for the embryonic development of the brownbanded bamboo shark (Chiloscyllium punctatum)

K Onimaru, F Motone, I Kiyatake… - Developmental …, 2018 - Wiley Online Library
Background: Studying cartilaginous fishes (chondrichthyans) has helped us understand
vertebrate evolution and diversity. However, resources such as genome sequences, embryos, …

Inference of the ancestral vertebrate phenotype through vestiges of the whole-genome duplications

K Onimaru, S Kuraku - Briefings in Functional Genomics, 2018 - academic.oup.com
Inferring the phenotype of the last common ancestor of living vertebrates is a challenging
problem because of several unresolvable factors. They include the lack of reliable out-groups …

Acquisition of the paired fins: a view from the sequential evolution of the lateral plate mesoderm

M Tanaka, K Onimaru - Evolution & development, 2012 - Wiley Online Library
The origin of paired fins has long been a focus of both paleontologists and developmental
biologists. Fossil records indicate that the first pair of fin‐like structures emerged in the body …