User profiles for Kornel Labun
Kornel LabunUniversity of Bergen Verified email at uib.no Cited by 2467 |
CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing
The CRISPR–Cas system is a powerful genome editing tool that functions in a diverse array
of organisms and cell types. The technology was initially developed to induce targeted …
of organisms and cell types. The technology was initially developed to induce targeted …
CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering
In just 3 years CRISPR genome editing has transformed biology, and its popularity and potency
continue to grow. New CRISPR effectors and rules for locating optimum targets continue …
continue to grow. New CRISPR effectors and rules for locating optimum targets continue …
tailfindr: alignment-free poly (A) length measurement for Oxford Nanopore RNA and DNA sequencing
Polyadenylation at the 3′-end is a major regulator of messenger RNA and its length is
known to affect nuclear export, stability, and translation, among others. Only recently have …
known to affect nuclear export, stability, and translation, among others. Only recently have …
CRISPR genome editing made easy through the CHOPCHOP website
The design of optimal guide RNA (gRNA) sequences for CRISPR systems is challenged by
the need to achieve highly efficient editing at the desired location (on‐target editing) with …
the need to achieve highly efficient editing at the desired location (on‐target editing) with …
Accurate analysis of genuine CRISPR editing events with ampliCan
We present ampliCan, an analysis tool for genome editing that unites highly precise
quantification and visualization of genuine genome editing events. ampliCan features nuclease-…
quantification and visualization of genuine genome editing events. ampliCan features nuclease-…
[HTML][HTML] ORFik: a comprehensive R toolkit for the analysis of translation
Background With the rapid growth in the use of high-throughput methods for characterizing
translation and the continued expansion of multi-omics, there is a need for back-end …
translation and the continued expansion of multi-omics, there is a need for back-end …
Rapid genome editing by CRISPR-Cas9-POLD3 fusion
Precision CRISPR gene editing relies on the cellular homology-directed DNA repair (HDR)
to introduce custom DNA sequences to target sites. The HDR editing efficiency varies …
to introduce custom DNA sequences to target sites. The HDR editing efficiency varies …
[PDF][PDF] Deep conservation of ribosome stall sites across RNA processing genes
K Chyżyńska, K Labun, C Jones… - NAR Genomics and …, 2021 - academic.oup.com
The rate of translation can vary depending on the mRNA template. During the elongation
phase the ribosome can transiently pause or permanently stall. A pause can provide the …
phase the ribosome can transiently pause or permanently stall. A pause can provide the …
Long-read single-molecule RNA structure sequencing using nanopore
RNA molecules can form secondary and tertiary structures that can regulate their
localization and function. Using enzymatic or chemical probing together with high-throughput …
localization and function. Using enzymatic or chemical probing together with high-throughput …
RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data
…, T Fiskerstrand, R Holdhus, K Labun… - …, 2016 - academic.oup.com
Motivation: The search for causative genetic variants in rare diseases of presumed monogenic
inheritance has been boosted by the implementation of whole exome (WES) and whole …
inheritance has been boosted by the implementation of whole exome (WES) and whole …