Atomic structure of the Y complex of the nuclear pore

K Kelley, KE Knockenhauer, G Kabachinski… - Nature structural & …, 2015 - nature.com
The nuclear pore complex (NPC) is the principal gateway for transport into and out of the
nucleus. Selectivity is achieved through the hydrogel-like core of the NPC. The structural …

[HTML][HTML] Waffle Method: A general and flexible approach for improving throughput in FIB-milling

K Kelley, AM Raczkowski, O Klykov, P Jaroenlak… - Nature …, 2022 - nature.com
… dedicated to Kotaro Kelley and his family to serve as a memory of him. Kotaro conceived of
Kotaro conceived of the Waffle Method as a specific solution to several collaborative projects…

[HTML][HTML] Topaz-Denoise: general deep denoising models for cryoEM and cryoET

T Bepler, K Kelley, AJ Noble, B Berger - Nature communications, 2020 - nature.com
Cryo-electron microscopy (cryoEM) is becoming the preferred method for resolving protein
structures. Low signal-to-noise ratio (SNR) in cryoEM images reduces the confidence and …

Alkylgold complexes by the intramolecular aminoauration of unactivated alkenes

…, D Benitez, E Tkatchouk, K Kelley… - Chemical …, 2010 - pubs.rsc.org
Alkylgold(I) complexes were formed from the gold(I)-promoted intramolecular addition of
various amine nucleophiles to alkenes. These experiments provide the first direct experimental …

Explicitly disentangling image content from translation and rotation with spatial-VAE

T Bepler, E Zhong, K Kelley… - Advances in Neural …, 2019 - proceedings.neurips.cc
Given an image dataset, we are often interested in finding data generative factors that
encode semantic content independently from pose variables such as rotation and translation. …

[HTML][HTML] The structure of natively iodinated bovine thyroglobulin

K Kim, M Kopylov, D Bobe, K Kelley, ET Eng… - … Section D: Structural …, 2021 - scripts.iucr.org
Thyroglobulin is a homodimeric glycoprotein that is essential for the generation of thyroid
hormones in vertebrates. Upon secretion into the lumen of follicles in the thyroid gland, tyrosine …

Reducing cryoEM file storage using lossy image formats

…, S Dallaykan, WJ Rice, KD Jordan, K Kelley… - Journal of structural …, 2019 - Elsevier
Recent advances in instrumentation and software for cryoEM have increased the applicability
and utility of this method. High levels of automation and faster data acquisition rates …

Waffle method: A general and flexible approach for FIB-milling small and anisotropically oriented samples

K Kelley, AM Raczkowski, O Klykov, P Jaroenlak… - BioRxiv, 2020 - biorxiv.org
… dedicated to Kotaro Kelley and his family, and serves as a memory of him. Kotaro conceived
Kotaro conceived of the Waffle Method as a specific solution to several collaborative projects…

The impact of data reduction and lossy image formats on electron microscope images

…, CJ Negro, S Dallaykan, WJ Rice, KD Jordan, K Kelley… - bioRxiv, 2018 - biorxiv.org
Recent advances in instrumentation and software for cryoEM have increased the applicability
and utility of this method. Coupled with the adoption of automated pipelines, significant …

Waffle Method for optimizing cryo-FIB-milling

K Kelley, P Jaroenlak, A Raczkowski, E Eng… - Microscopy and …, 2021 - cambridge.org
Cryo-electron tomography (cryo-ET) allows researchers to directly observe proteins and
subcellular structures in their native 3D cellular contexts at nanometer and sub-nanometer …