The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans
…, CA Rabiner, NC Lockhart, KG Ardlie, G Getz… - Science, 2015 - science.org
Understanding the functional consequences of genetic variation, and how it affects complex
human disease and quantitative traits, remains a critical challenge for biomedicine. We …
human disease and quantitative traits, remains a critical challenge for biomedicine. We …
[HTML][HTML] Sequence analysis of mutations and translocations across breast cancer subtypes
…, ML Cortes, JC Fernandez-Lopez, S Peng, KG Ardlie… - Nature, 2012 - nature.com
Breast carcinoma is the leading cause of cancer-related mortality in women worldwide, with
an estimated 1.38 million new cases and 458,000 deaths in 2008 alone 1 . This malignancy …
an estimated 1.38 million new cases and 458,000 deaths in 2008 alone 1 . This malignancy …
[HTML][HTML] Initial genome sequencing and analysis of multiple myeloma
…, GJ Ahmann, M Adli, KC Anderson, KG Ardlie… - Nature, 2011 - nature.com
Multiple myeloma is an incurable malignancy of plasma cells, and its pathogenesis is poorly
understood. Here we report the massively parallel sequencing of 38 tumour genomes and …
understood. Here we report the massively parallel sequencing of 38 tumour genomes and …
[PDF][PDF] A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis
…, AP Chokkalingam, HC Alexander, KG Ardlie… - The American Journal of …, 2004 - cell.com
Rheumatoid arthritis (RA) is the most common systemic autoimmune disease, affecting ∼1%
of the adult population worldwide, with an estimated heritability of 60%. To identify genes …
of the adult population worldwide, with an estimated heritability of 60%. To identify genes …
Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci
…, R Chen, L Alfredsson, CI Amos, KG Ardlie… - Nature …, 2010 - nature.com
To identify new genetic risk factors for rheumatoid arthritis, we conducted a genome-wide
association study meta-analysis of 5,539 autoantibody-positive individuals with rheumatoid …
association study meta-analysis of 5,539 autoantibody-positive individuals with rheumatoid …
Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder
…, GS Sachs, J Franklin, K Gordon-Smith, KG Ardlie… - Nature …, 2008 - nature.com
To identify susceptibility loci for bipolar disorder, we tested 1.8 million variants in 4,387 cases
and 6,209 controls and identified a region of strong association (rs10994336, P = 9.1 × 10 −…
and 6,209 controls and identified a region of strong association (rs10994336, P = 9.1 × 10 −…
[PDF][PDF] A large-scale genetic association study confirms IL12B and leads to the identification of IL23R as psoriasis-risk genes
…, R Brandon, KP Callis, N Matsunami, KG Ardlie… - The American Journal of …, 2007 - cell.com
We performed a multitiered, case-control association study of psoriasis in three independent
sample sets of white North American individuals (1,446 cases and 1,432 controls) with …
sample sets of white North American individuals (1,446 cases and 1,432 controls) with …
The human transcriptome across tissues and individuals
…, M Calvo, G Getz, ET Dermitzakis, KG Ardlie… - Science, 2015 - science.org
Transcriptional regulation and posttranscriptional processing underlie many cellular and
organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue …
organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue …
Patterns of linkage disequilibrium in the human genome
KG Ardlie, L Kruglyak, M Seielstad - Nature Reviews Genetics, 2002 - nature.com
Particular alleles at neighbouring loci tend to be co-inherited. For tightly linked loci, this
might lead to associations between alleles in the population — a property known as linkage …
might lead to associations between alleles in the population — a property known as linkage …
[HTML][HTML] Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program
The Trans-Omics for Precision Medicine (TOPMed) programme seeks to elucidate the genetic
architecture and biology of heart, lung, blood and sleep disorders, with the ultimate goal of …
architecture and biology of heart, lung, blood and sleep disorders, with the ultimate goal of …