User profiles for Krzysztof Rataj
Krzysztof RatajArdigen SA Verified email at ardigen.com Cited by 1279 |
GPCRdb: an information system for G protein-coupled receptors
Recent developments in G protein-coupled receptor (GPCR) structural biology and
pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and …
pharmacology have greatly enhanced our knowledge of receptor structure-function relations, and …
[HTML][HTML] Mol-CycleGAN: a generative model for molecular optimization
Designing a molecule with desired properties is one of the biggest challenges in drug
development, as it requires optimization of chemical compound structures with respect to many …
development, as it requires optimization of chemical compound structures with respect to many …
Molecule attention transformer
Designing a single neural network architecture that performs competitively across a range of
molecule property prediction tasks remains largely an open challenge, and its solution may …
molecule property prediction tasks remains largely an open challenge, and its solution may …
Salt bridge in ligand–protein complexes—systematic theoretical and statistical investigations
Although the salt bridge is the strongest among all known noncovalent molecular
interactions, no comprehensive studies have been conducted to date to examine its role and …
interactions, no comprehensive studies have been conducted to date to examine its role and …
JUMP Cell Painting dataset: morphological impact of 136,000 chemical and genetic perturbations
…, PJ Peeters, J Pilling, S Prechtl, C Qian, K Rataj… - Biorxiv, 2023 - biorxiv.org
Image-based profiling has emerged as a powerful technology for various steps in basic
biological and pharmaceutical discovery, but the community has lacked a large, public reference …
biological and pharmaceutical discovery, but the community has lacked a large, public reference …
GPCRdb: an information system for G protein-coupled receptors
“This article is based upon work from Action GLISTEN (www. glisten-gpcr. eu), supported by
COST (European Cooperation in Science and Technology, www. cost. eu), which is …
COST (European Cooperation in Science and Technology, www. cost. eu), which is …
Impact of template choice on homology model efficiency in virtual screening
K Rataj, J Witek, S Mordalski, T Kosciolek… - Journal of chemical …, 2014 - ACS Publications
Homology modeling is a reliable method of predicting the three-dimensional structures of
proteins that lack NMR or X-ray crystallographic data. It employs the assumption that a …
proteins that lack NMR or X-ray crystallographic data. It employs the assumption that a …
From Homology Models to a Set of Predictive Binding Pockets–a 5-HT1A Receptor Case Study
…, K Kristiansen, G Satała, K Rataj… - Journal of chemical …, 2017 - ACS Publications
Despite its remarkable importance in the arena of drug design, serotonin 1A receptor (5-HT
1A ) has been elusive to the X-ray crystallography community. This lack of direct structural …
1A ) has been elusive to the X-ray crystallography community. This lack of direct structural …
[HTML][HTML] Fingerprint-Based Machine Learning Approach to Identify Potent and Selective 5-HT2BR Ligands
K Rataj, ÁA Kelemen, J Brea, MI Loza, AJ Bojarski… - Molecules, 2018 - mdpi.com
The identification of subtype-selective GPCR (G-protein coupled receptor) ligands is a
challenging task. In this study, we developed a computational protocol to find compounds with 5-…
challenging task. In this study, we developed a computational protocol to find compounds with 5-…
An application of machine learning methods to structural interaction fingerprints—a case study of kinase inhibitors
In this Letter, we present a novel methodology of searching for biologically active compounds,
which is based on the combination of docking experiments and analysis of the results by …
which is based on the combination of docking experiments and analysis of the results by …