[HTML][HTML] The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery

…, I Amit, SE Antonarakis, S Aparicio, T Arima, L Arrigoni… - Cell, 2016 - cell.com
The International Human Epigenome Consortium (IHEC) coordinates the generation of a
catalog of high-resolution reference epigenomes of major primary human cell types. The …

[HTML][HTML] High-resolution TADs reveal DNA sequences underlying genome organization in flies

F Ramírez, V Bhardwaj, L Arrigoni, KC Lam… - Nature …, 2018 - nature.com
Despite an abundance of new studies about topologically associating domains (TADs), the
role of genetic information in TAD formation is still not fully understood. Here we use our …

[PDF][PDF] The glucose transporter GLUT3 controls T helper 17 cell responses through glycolytic-epigenetic reprogramming

SM Hochrein, H Wu, M Eckstein, L Arrigoni, JS Herman… - Cell metabolism, 2022 - cell.com
Metabolic reprogramming is a hallmark of activated T cells. The switch from oxidative
phosphorylation to aerobic glycolysis provides energy and intermediary metabolites for the …

[PDF][PDF] Epigenomic profiling of human CD4+ T cells supports a linear differentiation model and highlights molecular regulators of memory development

…, L Arrigoni, AD Amirabad, FB Ardakani, L Feuerbach… - Immunity, 2016 - cell.com
The impact of epigenetics on the differentiation of memory T (Tmem) cells is poorly defined.
We generated deep epigenomes comprising genome-wide profiles of DNA methylation, …

[PDF][PDF] The polycomb-dependent epigenome controls β cell dysfunction, dedifferentiation, and diabetes

…, E Casas, L Leonhardt, T Boenke, CH Yang, L Arrigoni… - Cell Metabolism, 2018 - cell.com
To date, it remains largely unclear to what extent chromatin machinery contributes to the
susceptibility and progression of complex diseases. Here, we combine deep epigenome …

Standardizing chromatin research: a simple and universal method for ChIP-seq

L Arrigoni, AS Richter, E Betancourt… - Nucleic acids …, 2016 - academic.oup.com
Chromatin immunoprecipitation followed by next generation sequencing (ChIP-seq) is a key
technique in chromatin research. Although heavily applied, existing ChIP-seq protocols are …

[HTML][HTML] Epigenetic dynamics of monocyte-to-macrophage differentiation

…, AS Richter, T Manke, U Bönisch, L Arrigoni… - Epigenetics & …, 2016 - Springer
Background Monocyte-to-macrophage differentiation involves major biochemical and structural
changes. In order to elucidate the role of gene regulatory changes during this process, …

Prognostic impact of the updated 2018 HFA‐ESC definition of advanced heart failure: results from the HELP‐HF registry

…, F Loiacono, C Tedino, L Arrigoni… - European Journal of …, 2022 - Wiley Online Library
Aims The Heart Failure Association of the European Society of Cardiology (HFA‐ESC)
proposed a definition of advanced heart failure (HF) that has not been validated, yet. We …

[HTML][HTML] A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

…, G Gasparoni, K Kattler, P Ebert, F Ramirez, L Arrigoni… - Genome biology, 2018 - Springer
Background Partially methylated domains are extended regions in the genome exhibiting a
reduced average DNA methylation level. They cover gene-poor and transcriptionally inactive …

[PDF][PDF] Lsd1 ablation triggers metabolic reprogramming of brown adipose tissue

…, D Willmann, K Petroll, N Messaddeq, L Arrigoni… - Cell reports, 2016 - cell.com
Previous work indicated that lysine-specific demethylase 1 (Lsd1) can positively regulate the
oxidative and thermogenic capacities of white and beige adipocytes. Here we investigate …