User profiles for L. Bongo

Lars Ailo Bongo

Computer Science, University of Tromsø
Verified email at cs.uit.no
Cited by 1333

DFS: A file system for virtualized flash storage

WK Josephson, LA Bongo, K Li, D Flynn - ACM Transactions on Storage …, 2010 - dl.acm.org
We present the design, implementation, and evaluation of Direct File System (DFS) for virtualized
flash storage. Instead of using traditional layers of abstraction, our layers of abstraction …

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

…, R Zhang, DC Corney, CS Greene, LA Bongo… - Nature …, 2015 - nature.com
We present SEEK (search-based exploration of expression compendia; http://seek.princeton.edu/
), a query-based search engine for very large transcriptomic data collections, including …

[HTML][HTML] A review of scalable bioinformatics pipelines

B Fjukstad, LA Bongo - Data Science and Engineering, 2017 - Springer
Scalability is increasingly important for bioinformatics analysis services, since these must
handle larger datasets, more jobs, and more users. The pipelines used to implement analyses …

[HTML][HTML] Reproduction study using public data of: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus …

M Voets, K Møllersen, LA Bongo - PloS one, 2019 - journals.plos.org
We have attempted to reproduce the results in Development and validation of a deep learning
algorithm for detection of diabetic retinopathy in retinal fundus photographs, published in …

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks

AK Wong, CY Park, CS Greene, LA Bongo… - Nucleic acids …, 2012 - academic.oup.com
Integrative multi-species prediction (IMP) is an interactive web server that enables molecular
biologists to interpret experimental results and to generate hypotheses in the context of a …

Replication study: Development and validation of deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs

M Voets, K Møllersen, LA Bongo - arXiv preprint arXiv:1803.04337, 2018 - arxiv.org
Replication studies are essential for validation of new methods, and are crucial to maintain
the high standards of scientific publications, and to use the results in practice. We have …

The metagenomic data life-cycle: standards and best practices

P Ten Hoopen, RD Finn, LA Bongo, E Corre… - …, 2017 - academic.oup.com
Metagenomics data analyses from independent studies can only be compared if the analysis
workflows are described in a harmonized way. In this overview, we have mapped the …

[PDF][PDF] Artocarpus heterophyllus lam.(moraceae): phytochemistry, Pharmacology and future directions, a mini-review

LE Moke, NGN Koto-te-Nyiwa, LM Bongo… - Journal of Advanced …, 2017 - researchgate.net
The aim of this mini-review was to collect data obtained from various studies carried out by
different authors concerning the phytochemistry and pharmacognosy of Artocarpus …

[HTML][HTML] Functional knowledge transfer for high-accuracy prediction of under-studied biological processes

…, J Rowland, Y Guan, LA Bongo… - PLoS computational …, 2013 - journals.plos.org
A key challenge in genetics is identifying the functional roles of genes in pathways. Numerous
functional genomics techniques (eg machine learning) that predict protein function have …

Feature extraction for machine learning based crackle detection in lung sounds from a health survey

…, JCA Solis, E Holsbø, H Melbye, LA Bongo - arXiv preprint arXiv …, 2017 - arxiv.org
In recent years, many innovative solutions for recording and viewing sounds from a stethoscope
have become available. However, to fully utilize such devices, there is a need for an …