[PDF][PDF] Interaction profiling identifies the human nuclear exosome targeting complex

…, MS Kristiansen, M Domanski, LG Falkenby… - Molecular cell, 2011 - cell.com
The RNA exosome is a conserved degradation machinery, which obtains full activity only
when associated with cofactors. The most prominent activator of the yeast nuclear exosome is …

Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods

…, Y Toyoda, E Lundberg, I Poser, LG Falkenby… - The EMBO …, 2011 - embopress.org
… RPMI 1640 medium at 37C, 5% CO 2 in a humidified incubator with normal l‐lysine (Lys0)
and l‐arginine (Arg0) or isotope‐labelled l‐lysine 2 H 4 (Lys4) or 13 C 6 15 N 2 (Lys8) and …

[HTML][HTML] A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics

…, DB Bekker-Jensen, O Hoerning, L Falkenby… - Molecular & Cellular …, 2018 - ASBMB
To further integrate mass spectrometry (MS)-based proteomics into biomedical research and
especially into clinical settings, high throughput and robustness are essential requirements. …

[HTML][HTML] Proteotranscriptomic profiling of 231-BR breast cancer cells: identification of potential biomarkers and therapeutic targets for brain metastasis*[S]

…, KA Avery-Kiejda, RJ Scott, LG Falkenby… - Molecular & Cellular …, 2015 - ASBMB
… Light condition medium was supplemented with l-lysine 2HCl (Lys0) l-arginine HCl (Arg0).
The concentrations of supplemented amino acids used were 50 mg/L. The cells were …

A targeted LC‐MS strategy for low‐abundant HLA class‐I‐presented peptide detection identifies novel human Papillomavirus T‐cell epitopes

R Blatnik, N Mohan, M Bonsack, LG Falkenby… - …, 2018 - Wiley Online Library
For rational design of therapeutic vaccines, detailed knowledge about target epitopes that are
endogenously processed and truly presented on infected or transformed cells is essential. …

Comparative proteomics and activity of a green sulfur bacterium through the water column of Lake Cadagno, Switzerland

…, M Tonolla, S Peduzzi, LG Falkenby… - Environmental …, 2011 - Wiley Online Library
… bacteriochlorophyll (BChl) a concentration of 41 µg l −1 at 12 m, whereas the highest
concentration of BChl e from the brown GSB was 231 µg l −1 at 12.25 m just below the PSB …

Integrated solid-phase extraction–capillary liquid chromatography (speLC) interfaced to ESI–MS/MS for fast characterization and quantification of protein and …

LG Falkenby, G Such-Sanmartín… - Journal of proteome …, 2014 - ACS Publications
The high peptide sequencing speed provided by modern hybrid tandem mass spectrometers
enables the utilization of fast liquid chromatographic (LC) separation techniques. We …

Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium

LG Falkenby, M Szymanska… - FEMS microbiology …, 2011 - academic.oup.com
C hlorobaculum (C ba.) tepidum is a green sulfur bacterium that oxidizes sulfide, elemental
sulfur, and thiosulfate for photosynthetic growth. To gain insight into the sulfur metabolism, …

[HTML][HTML] Quantitative proteomics identifies unanticipated regulators of nitrogen-and glucose starvation

…, D Pultz, M Brusch, MV Bennetzen, LG Falkenby… - Molecular …, 2014 - pubs.rsc.org
The molecular mechanisms underlying how cells sense, respond, and adapt to alterations
in nutrient availability have been studied extensively during the past years. While most of …

Covalent perturbation as a tool for validation of identifications and PTM mapping applied to bovine alpha‐crystallin

J Bunkenborg, LG Falkenby, LM Harder, H Molina - Proteomics, 2016 - Wiley Online Library
Proteomic identifications hinge on the measurement of both parent and fragment masses and
matching these to amino acid sequences via database search engines. The correctness of …