We review recent models to estimate phylogenetic trees under the multispecies coalescent.
Although the distinction between gene trees and species trees has come to the fore of …

… of a large sample of unlinked SNPs, which we can used to construct an estimate of the
matrix F l a t L 1 | L 2 ( P ) ⁠. We call this matrix F l a t L 1 | L 2 ( P ^ ) ⁠, and define this matrix by …

Although multiple gene sequences are becoming increasingly available for molecular
phylogenetic inference, the analysis of such data has largely relied on inference methods …

STEM is a software package written in the C language to obtain maximum likelihood (ML)
estimates for phylogenetic species trees given a sample of gene trees under the coalescent …

Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

Background The near exclusive use of praziquantel (PZQ) for treatment of human schistosomiasis
has raised concerns about the possible emergence of drug-resistant schistosomes. …

The evolutionary relationships among organisms have traditionally been represented using
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …

… previously identified using the K2P distances and for L. dipsar far less variation is apparent
… tabaci or to detect the established subspecies taxonomy of L. dispar. Given the ease of use …

… by the parameter vector Θ ˆ M L E = ( γ ˆ M L E , t ˆ M L E ) , are statistically consistent as the
… species), then Θ ˆ M L E is also asymptotically efficient, ie, (3) N ( Θ ˆ M L E − Θ ) ⟶ N o r m a …

… A split of a set of taxa L is a bipartition of L into two non-empty subsets L 1 and L … L 1 | L 2
be any split of a set of taxa L . A flattening of P, denoted by Flat L 1 | L 2 ( P ) , is a κ | L 1 | × κ | L …