Patterns and distances in words related to DNA rearrangement

N Jonoska, L Nabergall, M Saito - Fundamenta Informaticae, 2017 - content.iospress.com
We initiate studies of patterns in words that appear as subwords (not necessarily factors) of
words. A pattern is a string of variables, and we say that a pattern appears in a word if each …

Russian Doll Genes and Complex Chromosome Rearrangements in Oxytricha trifallax

J Braun, L Nabergall, R Neme… - G3: Genes …, 2018 - academic.oup.com
Ciliates have two different types of nuclei per cell, with one acting as a somatic, transcriptionally
active nucleus (macronucleus; abbr. MAC) and another serving as a germline nucleus (…

The combinatorics of a tree-like functional equation for connected chord diagrams

L Nabergall - arXiv preprint arXiv:2104.02296, 2021 - arxiv.org
L is such an operator; in particular, deg L(yn) ⩽ n+ 1 for all n ⩾ 0. Since L maps polynomials
to polynomials of degree at most one higher and G clearly has no constant term, G(x, y) = ∑ …

Insertions yielding equivalent double occurrence words

…, MM Ferrari, N Jonoska, L Nabergall… - Fundamenta …, 2020 - content.iospress.com
A double occurrence word (DOW) is a word in which every symbol appears exactly twice; two
DOWs are equivalent if one is a symbol-to-symbol image of the other. We consider the so …

An antidote for hawkmoths: on the prevalence of structural chaos in non-linear modeling

L Nabergall, A Navas, E Winsberg - European Journal for Philosophy of …, 2019 - Springer
This paper deals with the question of whether uncertainty regarding model structure, especially
in climate modeling, exhibits a kind of “chaos.” Do small changes in model structure, in …

Enumerative perspectives on chord diagrams

L Nabergall - 2022 - uwspace.uwaterloo.ca
… The rest of the thesis is the sole work of Lukas Nabergall. … for all 1 ⩽ i ⩽ k, and the gridded
subword of G induced by positions Lℓ is connected for all 1 ⩽ ⩽ m. Denote this set by G(T ). …

Tubings, chord diagrams, and Dyson--Schwinger equations

…, A Cantwell, K Ebrahimi-Fard, L Nabergall… - arXiv preprint arXiv …, 2023 - arxiv.org
… We want to stress that L is not necessarily the naive “energydependence” of the amplitude:
a change in L, with all angles fixed, amounts to a scaling of all momenta and all masses by …

[BOOK][B] Patterns in Words Related to DNA Rearrangements

L Nabergall - 2017 - search.proquest.com
Patterns, sequences of variables, have traditionally only been studied when morphic images
of them appear as factors in words. In this thesis, we initiate a study of patterns in words that …

Training Hard-Threshold Networks with Combinatorial Search in a Discrete Target Propagation Setting

L Nabergall, J Toth, L Cousins - 2018 - openreview.net
… The aim is to learn an l-layer neural network with hard-threshold activations … The
learning goal is to find weights W of f that minimize the training loss L(Hl,T) = ∑ m j=1 L(h …

An antidote for hawkmoths: a response to recent climate-skeptical arguments grounded in the topology of dynamical systems

A Navas, L Nabergall, E Winsberg - 2017 - philsci-archive.pitt.edu
In a series of recent papers, two of which appeared in this journal, a group of philosophers,
physicists, and climate scientists have argued that something they call the `hawkmoth effect' …