User profiles for L.-F. Nothias

Louis-Félix Nothias

Chaire de Professeur Junior CNRS - Université Cote d'Azur
Verified email at cnrs.fr
Cited by 24112

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

…, AT Naimey, JA Navas-Molina, LF Nothias… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

…, J Almaliti, PM Allard, P Phapale, LF Nothias… - Nature …, 2016 - nature.com
The potential of the diverse chemistries present in natural products (NP) for biotechnology
and medicine remains untapped because NP databases are not searchable with raw data …

[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

…, J Morton, AT Naimey, JA Navas-Molina, LF Nothias… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …

Feature-based molecular networking in the GNPS analysis environment

LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer… - Nature …, 2020 - nature.com
Molecular networking has become a key method to visualize and annotate the chemical space
in non-targeted mass spectrometry data. We present feature-based molecular networking …

Integrative analysis of multimodal mass spectrometry data in MZmine 3

…, A Rivas-Ubach, A Bilbao, H Richter, LF Nothias… - Nature …, 2023 - nature.com
Innovation in mass spectrometry (MS) and the rapidly increasing throughput and sensitivity of
MS instrumentation require adaptations and innovations in data processing tools. Here, we …

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

K Dührkop, LF Nothias, M Fleischauer, R Reher… - Nature …, 2021 - nature.com
Metabolomics using nontargeted tandem mass spectrometry can detect thousands of molecules
in a biological sample. However, structural molecule annotation is limited to structures …

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

…, KL McPhail, LF Nothias, M Nothias-Esposito… - Nature protocols, 2020 - nature.com
Global Natural Product Social Molecular Networking (GNPS) is an interactive online small
molecule–focused tandem mass spectrometry (MS 2 ) data curation and analysis infrastructure…

[HTML][HTML] High-confidence structural annotation of metabolites absent from spectral libraries

MA Hoffmann, LF Nothias, M Ludwig… - Nature …, 2022 - nature.com
Untargeted metabolomics experiments rely on spectral libraries for structure annotation, but,
typically, only a small fraction of spectra can be matched. Previous in silico methods search …

[HTML][HTML] Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Bioactivity-based molecular networking for the discovery of drug leads in natural product bioassay-guided fractionation

LF Nothias, M Nothias-Esposito… - Journal of natural …, 2018 - ACS Publications
It is a common problem in natural product therapeutic lead discovery programs that despite
good bioassay results in the initial extract, the active compound(s) may not be isolated during …