User profiles for Laurence Ettwiller
laurence ettwiller, Ph.DNew England Biolabs, INC Verified email at neb.com Cited by 6569 |
Functional and topological characteristics of mammalian regulatory domains
…, S Ruf, S Nassari, W Schwarzer, L Ettwiller… - Genome …, 2014 - genome.cshlp.org
Long-range regulatory interactions play an important role in shaping gene-expression
programs. However, the genomic features that organize these activities are still poorly …
programs. However, the genomic features that organize these activities are still poorly …
A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets
…, C Hunt, D Dolle, A Bithell, L Ettwiller… - Genes & …, 2011 - genesdev.cshlp.org
Proneural genes such as Ascl1 are known to promote cell cycle exit and neuronal differentiation
when expressed in neural progenitor cells. The mechanisms by which proneural genes …
when expressed in neural progenitor cells. The mechanisms by which proneural genes …
DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification
L Chen, P Liu, TC Evans Jr, LM Ettwiller - Science, 2017 - science.org
Mutations in somatic cells generate a heterogeneous genomic population and may result in
serious medical conditions. Although cancer is typically associated with somatic variations, …
serious medical conditions. Although cancer is typically associated with somatic variations, …
Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence
…, S Hadjur, J Wittbrodt, L Ettwiller… - Genes & …, 2013 - genesdev.cshlp.org
The majority of neural stem cells (NSCs) in the adult brain are quiescent, and this fraction
increases with aging. Although signaling pathways that promote NSC quiescence have been …
increases with aging. Although signaling pathways that promote NSC quiescence have been …
[PDF][PDF] Ascl1 coordinately regulates gene expression and the chromatin landscape during neurogenesis
The proneural transcription factor Ascl1 coordinates gene expression in both proliferating
and differentiating progenitors along the neuronal lineage. Here, we used a cellular model of …
and differentiating progenitors along the neuronal lineage. Here, we used a cellular model of …
Comparative genomics: genome-wide analysis in metazoan eukaryotes
A Ureta-Vidal, L Ettwiller, E Birney - Nature Reviews Genetics, 2003 - nature.com
The increasing number of complete and nearly complete metazoan genome sequences
provides a significant amount of material for large-scale comparative genomic analysis. Finding …
provides a significant amount of material for large-scale comparative genomic analysis. Finding …
Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
We present here a Sleeping Beauty–based transposition system that offers a simple and
efficient way to investigate the regulatory architecture of mammalian chromosomes in vivo. With …
efficient way to investigate the regulatory architecture of mammalian chromosomes in vivo. With …
[HTML][HTML] A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut …
L Ettwiller, J Buswell, E Yigit, I Schildkraut - BMC genomics, 2016 - Springer
Background The initiating nucleotide found at the 5’ end of primary transcripts has a distinctive
triphosphorylated end that distinguishes these transcripts from all other RNA species. …
triphosphorylated end that distinguishes these transcripts from all other RNA species. …
[HTML][HTML] The light responsive transcriptome of the zebrafish: function and regulation
…, O Armant, D Dolle, K Lahiri, D Vallone, L Ettwiller… - PloS one, 2011 - journals.plos.org
Most organisms possess circadian clocks that are able to anticipate the day/night cycle and
are reset or “entrained” by the ambient light. In the zebrafish, many organs and even cultured …
are reset or “entrained” by the ambient light. In the zebrafish, many organs and even cultured …
Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5 …
…, S Pradhan, TB Davis, TC Evans, LM Ettwiller - Genome …, 2021 - genome.cshlp.org
The predominant methodology for DNA methylation analysis relies on the chemical deamination
by sodium bisulfite of unmodified cytosine to uracil to permit the differential readout of …
by sodium bisulfite of unmodified cytosine to uracil to permit the differential readout of …