A method and server for predicting damaging missense mutations
2). For instance, in this setting with m= 10 and q= 10, IDA found 4, 4, 5, 1 and 2 true positives
for the five different networks, whereas Lasso found 1, 1, 0, 1 and 2 true positives and …
for the five different networks, whereas Lasso found 1, 1, 0, 1 and 2 true positives and …
[PDF][PDF] Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells
It has long been the dream of biologists to map gene expression at the single-cell level.
With such data one might track heterogeneous cell sub-populations, and infer regulatory …
With such data one might track heterogeneous cell sub-populations, and infer regulatory …
[HTML][HTML] Genome sequencing reveals insights into physiology and longevity of the naked mole rat
…, Y Zhu, Y Chen, GV Kryukov, Q Zhang, L Peshkin… - Nature, 2011 - nature.com
The naked mole rat (Heterocephalus glaber) is a strictly subterranean, extraordinarily long-lived
eusocial mammal 1 . Although it is the size of a mouse, its maximum lifespan exceeds …
eusocial mammal 1 . Although it is the size of a mouse, its maximum lifespan exceeds …
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
INTRODUCTION Metazoan development represents a big jump in complexity compared
with unicellular life in two aspects: cell-type differentiation and cell spatial organization. In …
with unicellular life in two aspects: cell-type differentiation and cell spatial organization. In …
[PDF][PDF] Resveratrol delays age-related deterioration and mimics transcriptional aspects of dietary restriction without extending life span
A small molecule that safely mimics the ability of dietary restriction (DR) to delay age-related
diseases in laboratory animals is greatly sought after. We and others have shown that …
diseases in laboratory animals is greatly sought after. We and others have shown that …
[PDF][PDF] A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors
…, S Coyne, WY William, RM Freeman, L Peshkin… - Cell reports, 2017 - cell.com
Mammals have extremely limited regenerative capabilities; however, axolotls are profoundly
regenerative and can replace entire limbs. The mechanisms underlying limb regeneration …
regenerative and can replace entire limbs. The mechanisms underlying limb regeneration …
Learning to cooperate via policy search
Cooperative games are those in which both agents share the same payoff structure. Value-based
reinforcement-learning algorithms, such as variants of Q-learning, have been applied …
reinforcement-learning algorithms, such as variants of Q-learning, have been applied …
[PDF][PDF] A noncanonical Frizzled2 pathway regulates epithelial-mesenchymal transition and metastasis
Wnt signaling plays a critical role in embryonic development, and genetic aberrations in this
network have been broadly implicated in colorectal cancer. We find that the Wnt receptor …
network have been broadly implicated in colorectal cancer. We find that the Wnt receptor …
[PDF][PDF] Solving very large weakly coupled Markov decision processes
We present a technique for computing approximately optimal solutions to stochastic resource
allocation problems modeled as Markov decision processes (MDPs). We exploit two key …
allocation problems modeled as Markov decision processes (MDPs). We exploit two key …
[HTML][HTML] Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database
Background Mass spectrometry-based proteomics enables the global identification and
quantification of proteins and their posttranslational modifications in complex biological samples. …
quantification of proteins and their posttranslational modifications in complex biological samples. …