A method and server for predicting damaging missense mutations

IA Adzhubei, S Schmidt, L Peshkin, VE Ramensky… - Nature …, 2010 - nature.com
2). For instance, in this setting with m= 10 and q= 10, IDA found 4, 4, 5, 1 and 2 true positives
for the five different networks, whereas Lasso found 1, 1, 0, 1 and 2 true positives and …

[PDF][PDF] Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells

…, I Akartuna, N Tallapragada, A Veres, V Li, L Peshkin… - Cell, 2015 - cell.com
It has long been the dream of biologists to map gene expression at the single-cell level.
With such data one might track heterogeneous cell sub-populations, and infer regulatory …

[HTML][HTML] Genome sequencing reveals insights into physiology and longevity of the naked mole rat

…, Y Zhu, Y Chen, GV Kryukov, Q Zhang, L Peshkin… - Nature, 2011 - nature.com
The naked mole rat (Heterocephalus glaber) is a strictly subterranean, extraordinarily long-lived
eusocial mammal 1 . Although it is the size of a mouse, its maximum lifespan exceeds …

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

…, C Weinreb, DE Wagner, S Megason, L Peshkin… - Science, 2018 - science.org
INTRODUCTION Metazoan development represents a big jump in complexity compared
with unicellular life in two aspects: cell-type differentiation and cell spatial organization. In …

[PDF][PDF] Resveratrol delays age-related deterioration and mimics transcriptional aspects of dietary restriction without extending life span

KJ Pearson, JA Baur, KN Lewis, L Peshkin, NL Price… - Cell metabolism, 2008 - cell.com
A small molecule that safely mimics the ability of dietary restriction (DR) to delay age-related
diseases in laboratory animals is greatly sought after. We and others have shown that …

[PDF][PDF] A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors

…, S Coyne, WY William, RM Freeman, L Peshkin… - Cell reports, 2017 - cell.com
Mammals have extremely limited regenerative capabilities; however, axolotls are profoundly
regenerative and can replace entire limbs. The mechanisms underlying limb regeneration …

Learning to cooperate via policy search

L Peshkin, KE Kim, N Meuleau, LP Kaelbling - arXiv preprint cs/0105032, 2001 - arxiv.org
Cooperative games are those in which both agents share the same payoff structure. Value-based
reinforcement-learning algorithms, such as variants of Q-learning, have been applied …

[PDF][PDF] A noncanonical Frizzled2 pathway regulates epithelial-mesenchymal transition and metastasis

TS Gujral, M Chan, L Peshkin, PK Sorger… - Cell, 2014 - cell.com
Wnt signaling plays a critical role in embryonic development, and genetic aberrations in this
network have been broadly implicated in colorectal cancer. We find that the Wnt receptor …

[PDF][PDF] Solving very large weakly coupled Markov decision processes

N Meuleau, M Hauskrecht, KE Kim, L Peshkin… - AAAI/IAAI, 1998 - cs.brown.edu
We present a technique for computing approximately optimal solutions to stochastic resource
allocation problems modeled as Markov decision processes (MDPs). We exploit two key …

[HTML][HTML] Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database

M Wühr, RM Freeman, M Presler, ME Horb, L Peshkin… - Current biology, 2014 - cell.com
Background Mass spectrometry-based proteomics enables the global identification and
quantification of proteins and their posttranslational modifications in complex biological samples. …