Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution

…, L Dong, L Cao, Y Tao, L Hao… - Proceedings of the …, 2015 - National Acad Sciences
The prevailing view that the evolution of cells in a tumor is driven by Darwinian selection
has never been rigorously tested. Because selection greatly affects the level of intratumor …

Identification of functional cooperative mutations of SETD2 in human acute leukemia

…, C Hua, Y Zhang, X Yang, X Lu, L Cao, L Hao… - Nature …, 2014 - nature.com
Acute leukemia characterized by chromosomal rearrangements requires additional molecular
disruptions to develop into full-blown malignancy 1 , 2 , yet the cooperative mechanisms …

Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data

…, HY Wang, J Zhang, SH Wang, L Hao… - Proceedings of the …, 2011 - National Acad Sciences
We present the analysis of the evolution of tumors in a case of hepatocellular carcinoma. This
case is particularly informative about cancer growth dynamics and the underlying driving …

[HTML][HTML] Integrated genomic analysis identifies deregulated JAK/STAT-MYC-biosynthesis axis in aggressive NK-cell leukemia

L Huang, D Liu, N Wang, S Ling, Y Tang, J Wu, L Hao… - Cell research, 2018 - nature.com
Aggressive NK-cell leukemia (ANKL) is a rare form of NK cell neoplasm that is more prevalent
among people from Asia and Central and South America. Patients usually die within days …

[HTML][HTML] Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance

…, J Shang, F Liang, D Wang, H Chen, L Sun, L Hao… - Genome Biology, 2023 - Springer
Background Genomic DNA reference materials are widely recognized as essential for ensuring
data quality in omics research. However, relying solely on reference datasets to evaluate …

[HTML][HTML] Long non-coding RNA C5orf66-AS1 is downregulated in pituitary null cell adenomas and is associated with their invasiveness

…, W Xie, Z Wang, H Gao, L Cao, L Hao… - Oncology …, 2017 - spandidos-publications.com
Pituitary null cell adenoma is a challenging clinical condition, and its pathogenesis remains
to be elucidated. We performed this study to determine the roles of C5orf66-AS1, NORAD, …

GVC: An ultra-fast and all-round genome variant caller

Z Zhang, L Yin, L Hao, L Cao, C Liu, M Chen, C Li, Z Xu… - bioRxiv, 2017 - biorxiv.org
Genome variant detection is a challenge task in cancer genome analysis. Current software
for variant detection is very time-consuming and in the same time not accurate enough to …

Primary halo characteristics of the north ore zone in the Huachanggou gold deposit, Lueyang County, Shaanxi Province

…, W Li-xin, YU Kang-wei, W Ling-tong - Geology in …, 2012 - geochina.cgs.gov.cn
Abstract: The Huachanggou gold deposit of Shaanxi Province occurs in the submarine basic
volcanic effusive spillite. Based on field geological work in the Huachanggou gold deposit, …

Whole-exome sequencing of neuroendocrine neoplasm of the liver reveals recurrent mutations in components of RTK-RAS pathways

L Chen, Y Ji, J Zhao, L Hao, Y Li, X Zhang, H Sun… - Cancer Research, 2019 - AACR
Aims: Primary hepatic neuroendocrine neoplasms (phNENs) is a rare and poorly
understood type of primary liver cancer. We aimed to perform a comprehensive molecular …

[PDF][PDF] GVC: A superfast and universal genomic variant caller

Z Zhang, L Yin, L Cao, C Liu, L Hao, S Ling - bioRxiv, 2017 - scholar.archive.org
Germline and somatic variant detection from human and cancer whole-genome sequencing
data is a challenge task for genome-wide association study and cancer genomics in …