User profiles for Lisa Sikkema

Lisa Sikkema

Helmholtz Munich
Verified email at helmholtz-munich.de
Cited by 1081

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral …

…, G Eraslan, A Waghray, G Heimberg, L Sikkema… - BioRxiv, 2020 - biorxiv.org
The COVID-19 pandemic, caused by the novel coronavirus SARS-CoV-2, creates an urgent
need for identifying molecular mechanisms that mediate viral entry, propagation, and tissue …

An integrated cell atlas of the human lung in health and disease

L Sikkema, D Strobl, L Zappia, E Madissoon… - BioRxiv, 2022 - biorxiv.org
Organ- and body-scale cell atlases have the potential to transform our understanding of
human biology. To capture the variability present in the population, these atlases must include …

[HTML][HTML] An integrated cell atlas of the lung in health and disease

L Sikkema, C Ramírez-Suástegui, DC Strobl… - Nature Medicine, 2023 - nature.com
Single-cell technologies have transformed our understanding of human tissues. Yet, studies
typically capture only a limited number of donors and disagree on cell type definitions. …

[HTML][HTML] Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

C Muus, MD Luecken, G Eraslan, L Sikkema… - Nature medicine, 2021 - nature.com
Angiotensin-converting enzyme 2 (ACE2) and accessory proteases (TMPRSS2 and CTSL)
are needed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cellular entry…

Fully defined human pluripotent stem cell-derived microglia and tri-culture system model C3 production in Alzheimer's disease

SR Guttikonda, L Sikkema, J Tchieu, N Saurat… - Nature …, 2021 - nature.com
Aberrant inflammation in the CNS has been implicated as a major player in the pathogenesis
of human neurodegenerative disease. We developed a new approach to derive microglia …

Precancerous neoplastic cells can move through the pancreatic ductal system

…, M Zhang, JG Reiter, JM Gerold, Y Jiao, L Sikkema… - Nature, 2018 - nature.com
Most adult carcinomas develop from noninvasive precursor lesions, a progression that is
supported by genetic analysis. However, the evolutionary and genetic relationships among co-…

[HTML][HTML] The discovAIR project: a roadmap towards the Human Lung Cell Atlas

…, LE Zaragosi, E Madissoon, L Sikkema… - European …, 2022 - Eur Respiratory Soc
The Human Cell Atlas (HCA) consortium aims to establish an atlas of all organs in the healthy
human body at single-cell resolution to increase our understanding of basic biological …

PP6C hotspot mutations in melanoma display sensitivity to Aurora kinase inhibition

…, EVS de Miera, D Wang, N Fleming, L Sikkema… - Molecular cancer …, 2014 - AACR
Recent whole genome melanoma sequencing studies have identified recurrent mutations in
the gene encoding the catalytic subunit of serine/threonine phosphatase 6 (PPP6C/PP6C). …

Exploratory electronic health record analysis with ehrapy

…, R Knoll, NJ Lang, L Hetzel, I Virshup, L Sikkema… - medRxiv, 2023 - medrxiv.org
With progressive digitalization of healthcare systems worldwide, large-scale collection of
electronic health records (EHRs) has become commonplace. However, an extensible …

[PDF][PDF] Single-cell reference mapping to construct and extend cell-type hierarchies

…, M Lotfollahi, D Strobl, L Sikkema… - NAR Genomics and …, 2023 - academic.oup.com
Single-cell genomics is now producing an ever-increasing amount of datasets that, when
integrated, could provide large-scale reference atlases of tissue in health and disease. Such …