MolProbity: More and better reference data for improved all‐atom structure validation

…, NW Moriarty, MG Prisant, LL Videau… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …

[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

…, TC Terwilliger, AG Urzhumtsev, LL Videau… - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful
methods to determine three-dimensional macromolecular structures, which are required to …

[HTML][HTML] Model validation: local diagnosis, correction and when to quit

…, BJ Hintze, VB Chen, MG Prisant, LL Videau… - … Section D: Structural …, 2018 - scripts.iucr.org
Traditionally, validation was considered to be a final gatekeeping function, but refinement is
smoother and results are better if model validation actively guides corrections throughout …

[HTML][HTML] Broad analysis of vicinal disulfides: occurrences, conformations with cis or with trans peptides, and functional roles including sugar binding

JS Richardson, LL Videau, CJ Williams… - Journal of molecular …, 2017 - Elsevier
Vicinal disulfides between sequence-adjacent cysteine residues are very rare and rather
startling structural features which play a variety of functional roles. Typically discussed as an …

Assessment of detailed conformations suggests strategies for improving cryoEM models: helix at lower resolution, ensembles, pre-refinement fixups, and validation at …

JS Richardson, CJ Williams, LL Videau… - Journal of Structural …, 2018 - Elsevier
We find that the overall quite good methods used in the CryoEM Model Challenge could still
benefit greatly from several strategies for improving local conformations. Our assessments …

Cis-nonPro Peptides: Genuine Occurrences and their Functional Roles

CJ Williams, LL Videau, DC Richardson… - BioRxiv, 2018 - biorxiv.org
Cis-nonPro peptides, a very rare feature in protein structures, are of considerable importance
for two opposite reasons. On one hand, their genuine occurrences are mostly found at sites …

The cis‐pro touch‐turn: A rare motif preferred at functional sites

LL Videau, WB Arendall III… - … : Structure, Function, and …, 2004 - Wiley Online Library
A new motif of three-dimensional (3D) protein structure is described, called the cis-Pro touch-turn.
In this four-residue, three-peptide motif, the central peptide is cis. Residue 2, which …

[PDF][PDF] TOOLS FOR PROTEIN SCIENCE

…, JJ Headd, NW Moriarty, MG Prisant, LL Videau… - kinemage.biochem.duke.edu
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …

Molecular Therapy for 2.5-4Å Models: Anecdotes and Progress from the CryoEM Model Challenge

JS Richardson, CJ Williams, LL Videau… - … A: Foundations and …, 2018 - scripts.iucr.org
Many of the most exciting macromolecular structures are currently in the 2.5-4Å resolution
range--considered" low" for X-ray and" high" for cryoEM. For those techniques there are …

Assessment of Anabaena sp. Strain PCC 7120 as a Heterologous Expression Host for Cyanobacterial Natural Products: Production of Lyngbyatoxin A

P Videau, KN Wells, AJ Singh, WH Gerwick… - ACS synthetic …, 2016 - ACS Publications
… Samantha O’Hanlon-Videau is thanked for aid in statistical analysis. We would like to thank
Philip Proteau (Oregon State University) and Lizbeth Videau (Duke University) for critical …