User profiles for Louis Benedikt Kuemmerle
Louis Benedikt KümmerlePhD student, Helmholtz Center Munich Verified email at helmholtz-muenchen.de Cited by 452 |
[HTML][HTML] Squidpy: a scalable framework for spatial omics analysis
Spatial omics data are advancing the study of tissue organization and cellular communication
at an unprecedented scale. Flexible tools are required to store, integrate and visualize the …
at an unprecedented scale. Flexible tools are required to store, integrate and visualize the …
Squidpy: a scalable framework for spatial single cell analysis
Spatial omics data are advancing the study of tissue organization and cellular communication
at an unprecedented scale. Here, we present Squidpy, a Python framework that brings …
at an unprecedented scale. Here, we present Squidpy, a Python framework that brings …
Discrete representation learning for modeling imaging-based spatial transcriptomics data
DVK Yarlagadda, J Massagué… - Proceedings of the …, 2023 - openaccess.thecvf.com
Imaging-based spatial transcriptomics (ST) provides single-transcript-level spatial resolution
for hundreds of genes, unlike sequencing-based ST technologies whose resolution is …
for hundreds of genes, unlike sequencing-based ST technologies whose resolution is …
[BOOK][B] Illuminating Tissue Organization by Imaging the Spatial Transcriptome
LE Borm - 2023 - search.proquest.com
Our bodies consist of a large collection of cells that each have their own function in the
organ that they reside in. The cells are grouped by functionality in cell types that arise during …
organ that they reside in. The cells are grouped by functionality in cell types that arise during …
[BOOK][B] THE'GEISTLICHES GESANGBUECHLEIN'OF JOHANN WALTER AND ITS HISTORICAL ENVIRONMENT
LR Warkentin - 1967 - search.proquest.com
Four years after Columbus discovered America, Johann Walter was born in the vi11age of
Kahla in Thuringia. Seventy-four years 1 ater, grown old and tired from years of diligent work …
Kahla in Thuringia. Seventy-four years 1 ater, grown old and tired from years of diligent work …
[HTML][HTML] Recent advances in spatially variable gene detection in spatial transcriptomics
With the emergence of advanced spatial transcriptomic technologies, there has been a
surge in research papers dedicated to analyzing spatial transcriptomics data, resulting in …
surge in research papers dedicated to analyzing spatial transcriptomics data, resulting in …
Nonnegative spatial factorization
FW Townes, BE Engelhardt - arXiv preprint arXiv:2110.06122, 2021 - arxiv.org
Gaussian processes are widely used for the analysis of spatial data due to their
nonparametric flexibility and ability to quantify uncertainty, and recently developed scalable …
nonparametric flexibility and ability to quantify uncertainty, and recently developed scalable …
Impact of bioturbation on sediment redistribution in coastal Chile-As estimated by combining remote sensing, machine learning and semi-empirical modelling
P Grigusova - 2023 - archiv.ub.uni-marburg.de
The burial activity of terrestrial bioturbators influences the microtopography, surface roughness,
and physical properties of the soil. By reworking sediments, bioturbators increase soil …
and physical properties of the soil. By reworking sediments, bioturbators increase soil …
CellPie: a fast spatial transcriptomics topic discovery method via joint factorization of gene expression and imaging data
S Georgaka, WG Morgans, Q Zhao… - bioRxiv, 2023 - biorxiv.org
Motivation: Spatially resolved transcriptomics has enabled the study of expression of genes
within tissues while retaining their spatial identity. The lack of single-cell resolution for most …
within tissues while retaining their spatial identity. The lack of single-cell resolution for most …
[HTML][HTML] Adipose triglyceride lipase activity regulates cancer cell proliferation via AMP-kinase and mTOR signaling
H Xie, C Heier, B Kien, PW Vesely, Z Tang… - … et Biophysica Acta (BBA …, 2020 - Elsevier
Aberrant fatty acid (FA) metabolism is a hallmark of proliferating cells, including untransformed
fibroblasts or cancer cells. Lipolysis of intracellular triglyceride (TG) stores by adipose …
fibroblasts or cancer cells. Lipolysis of intracellular triglyceride (TG) stores by adipose …