User profiles for Lucas Waldburger

Lucas M. Waldburger

UC Berkeley
Verified email at berkeley.edu
Cited by 2275

[HTML][HTML] Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris: The Tabula Muris Consortium

…, K Tellez, KJ Travaglini, C Tropini, L Waldburger… - Nature, 2018 - ncbi.nlm.nih.gov
We have created a compendium of single cell transcriptomic data from the model organism
Mus musculus comprising more than 100,000 cells from 20 organs and tissues. These data …

Modular and tunable biological feedback control using a de novo protein switch

…, RA Langan, SE Boyken, JA Samson, LM Waldburger… - Nature, 2019 - nature.com
De novo-designed proteins 1 , 2 – 3 hold great promise as building blocks for synthetic circuits,
and can complement the use of engineered variants of natural proteins 4 , 5 , 6 – 7 . One …

[HTML][HTML] Perspectives for self-driving labs in synthetic biology

…, CJ Mungall, GT Beckham, L Waldburger… - Current Opinion in …, 2023 - Elsevier
Lucas Waldburger 18 , James Carothers 12 , ShivShankar Sundaram 10 11 , Deb Agarwal
5 , Blake A Simmons 1 2 3 , Tyler Backman 1 3 , Deepanwita Banerjee 1 3 , Deepti Tanjore 1 …

[HTML][HTML] Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new intrinsically disordered regions in proteins

…, R Sachdeva, J West-Roberts, L Waldburger… - PLoS …, 2023 - journals.plos.org
Borgs are huge, linear extrachromosomal elements associated with anaerobic methane-oxidizing
archaea. Striking features of Borg genomes are pervasive tandem direct repeat (TR) …

The pGinger family of expression plasmids

…, C Ho, KM Vuu, LM Waldburger… - Microbiology …, 2023 - Am Soc Microbiol
The pGinger suite of expression plasmids comprises 43 plasmids that will enable precise
constitutive and inducible gene expression in a wide range of Gram-negative bacterial species…

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

…, K Tellez, KJ Travaglini, C Tropini, L Waldburger… - BioRxiv, 2017 - biorxiv.org
We have created a compendium of single cell transcriptome data from the model organism
Mus musculus comprising nearly 100,000 cells from 20 organs and tissues. These data …

Transcriptome architecture of the three main lineages of agrobacteria

L Waldburger, MG Thompson, AJ Weisberg, N Lee… - Msystems, 2023 - Am Soc Microbiol
Agrobacteria are a diverse, polyphyletic group of prokaryotes with multipartite genomes
capable of transferring DNA into the genomes of host plants, making them an essential tool in …

Transcriptome architecture of the three main lineages of agrobacteria

W Lucas, MG Thompson, AJ Weisberg, N Lee… - …, 2023 - search.proquest.com
ABSTRACT Agrobacteria are a diverse, polyphyletic group of prokaryotes with multipartite
genomes capable of transferring DNA into the genomes of host plants, making them an …

Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana

K Markel, LM Waldburger, P Shih - bioRxiv, 2024 - biorxiv.org
RNA methylation plays a central regulatory role in plant biology and is a relatively new
target for plant improvement efforts. In nearly all cases, perturbation of the RNA methylation …

Genetically refactored Agrobacterium-mediated transformation

…, LD Kirkpatrick, GM Geiselman, LM Waldburger… - bioRxiv, 2023 - biorxiv.org
Members of Agrobacterium are costly plant pathogens while also essential tools for plant
transformation. Though Agrobacterium-mediated transformation (AMT) has been heavily …