User profiles for Ludovic Gillet

Ludovic Gillet

- Verified email at imsb.biol.ethz.ch - Cited by 10592

Ludovic Gillet

- Verified email at roche.com - Cited by 1565

[HTML][HTML] Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

LC Gillet, P Navarro, S Tate, H Röst, N Selevsek… - Molecular & Cellular …, 2012 - ASBMB
Most proteomic studies use liquid chromatography coupled to tandem mass spectrometry to
identify and quantify the peptides generated by the proteolysis of a biological sample. …

Molecular mechanisms of mammalian global genome nucleotide excision repair

LCJ Gillet, OD Schärer - Chemical reviews, 2005 - ACS Publications
Over the past few years, media have popularized the story of the “children of the moon” who
must remain in the dark and avoid exposure to sunlight. 1r3 These children suffer from a …

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

C Ludwig, L Gillet, G Rosenberger, S Amon… - Molecular systems …, 2018 - embopress.org
Many research questions in fields such as personalized medicine, drug screens or systems
biology depend on obtaining consistent and quantitatively accurate proteomics data from …

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

HL Röst, G Rosenberger, P Navarro, L Gillet… - Nature …, 2014 - nature.com
Ludovic Gillet … Hannes L Röst, George Rosenberger, Pedro Navarro, Ludovic Gillet, Saša
M Miladinović, Olga T Schubert, Ben C Collins, Lars Malmström & Ruedi … Ludovic Gillet

Mass spectrometry applied to bottom-up proteomics: entering the high-throughput era for hypothesis testing

LC Gillet, A Leitner, R Aebersold - Annual review of analytical …, 2016 - annualreviews.org
Proteins constitute a key class of molecular components that perform essential biochemical
reactions in living cells. Whether the aim is to extensively characterize a given protein or to …

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski… - Nature medicine, 2015 - nature.com
Clinical specimens are each inherently unique, limited and nonrenewable. Small samples
such as tissue biopsies are often completely consumed after a limited number of analyses. …

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

BC Collins, LC Gillet, G Rosenberger, HL Röst… - Nature …, 2013 - nature.com
Protein complexes and protein interaction networks are essential mediators of most
biological functions. Complexes supporting transient functions such as signal transduction …

Quantitative variability of 342 plasma proteins in a human twin population

Y Liu, A Buil, BC Collins, LCJ Gillet… - Molecular systems …, 2015 - embopress.org
The degree and the origins of quantitative variability of most human plasma proteins are
largely unknown. Because the twin study design provides a natural opportunity to estimate the …

Building high-quality assay libraries for targeted analysis of SWATH MS data

OT Schubert, LC Gillet, BC Collins, P Navarro… - Nature protocols, 2015 - nature.com
Targeted proteomics by selected/multiple reaction monitoring (S/MRM) or, on a larger scale,
by SWATH (sequential window acquisition of all theoretical spectra) MS (mass spectrometry…

A multicenter study benchmarks software tools for label-free proteome quantification

P Navarro, J Kuharev, LC Gillet, OM Bernhardt… - Nature …, 2016 - nature.com
Consistent and accurate quantification of proteins by mass spectrometry (MS)-based
proteomics depends on the performance of instruments, acquisition methods and data analysis …