Chemical cross-linking and mass spectrometry for protein structural modeling

…, L de Jong, AO Muijsers, CG de Koster - Journal of molecular …, 2003 - Elsevier
The growth of gene and protein sequence information is currently so rapid that three-dimensional
structural information is lacking for the overwhelming majority of known proteins. In this …

Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus

…, B Van Steensel, R Van Driel, L De Jong - The Journal of cell …, 1993 - rupress.org
Several nuclear activities and components are concentrated in discrete nuclear compartments.
To understand the functional significance of nuclear compartmentalization, knowledge on …

Proteomic Analysis of Candida albicans Cell Walls Reveals Covalently Bound Carbohydrate-Active Enzymes and Adhesins

…, L de Jong, KJ Hellingwerf, C de Koster… - Eukaryotic …, 2004 - Am Soc Microbiol
Covalently linked cell wall proteins (CWPs) of the dimorphic fungus Candida albicans are
implicated in virulence. We have carried out a comprehensive proteomic analysis of the …

Binding of matrix attachment regions to lamin B1

…, E Mattia, JL den Blaauwen, MA Grande, L de Jong… - Cell, 1992 - cell.com
Eukaryotic chromatin is organized into topologically constrained loops that are attached to
the nuclear matrix. The regions of DNA that interact with the matrix are called matrix …

[HTML][HTML] Comprehensive proteomic analysis of Saccharomyces cerevisiae cell walls: identification of proteins covalently attached via glycosylphosphatidylinositol …

QY Yin, PWJ de Groot, HL Dekker, L de Jong… - Journal of Biological …, 2005 - ASBMB
The cell wall of yeast contains proteins that are covalently bound to the glycan network. These
cell wall proteins (CWPs) mediate cell-cell interactions and may be involved in cell wall …

A monoclonal antibody recognizing nuclear matrix-associated nuclear bodies

…, A Floore, A Josso, B Humbel, LD Jong… - Journal of cell …, 1992 - journals.biologists.com
We have isolated a monoclonal antibody, 5E10, that labels discrete spots in the interphase
nucleus. By immunoblotting mAb SE10 recognized predominantly a 126 kDa polypeptide …

A structure for the yeast prohibitin complex: Structure prediction and evidence from chemical crosslinking and mass spectrometry

JW Back, MA Sanz, L De Jong, LJ De Koning… - Protein …, 2002 - Wiley Online Library
The mitochondrial prohibitin complex consists of two subunits (PHB1 of 32 kD and PHB2 of
34 kD), assembled into a membrane‐associated supercomplex of approximately 1 MD. A …

Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II

MA Grande, I Kraan, L Jong, R Driel - Journal of cell science, 1997 - journals.biologists.com
We have investigated the spatial relationship between sites containing newly synthesized
RNA and domains containing proteins involved in transcription, such as RNA polymerase II …

Selective enrichment of azide-containing peptides from complex mixtures

…, JH van Maarseveen, L de Jong… - Journal of proteome …, 2009 - ACS Publications
A general method is described to sequester peptides containing azides from complex peptide
mixtures, aimed at facilitating mass spectrometric analysis to study different aspects of …

[HTML][HTML] The nuclear matrix from cells of different origin. Evidence for a common set of matrix proteins.

…, AM Meijne, AJ van der Pol, L de Jong… - Journal of Biological …, 1990 - Elsevier
We compared the protein composition of the nuclear matrix isolated from several murine
embryonal carcinoma cells and mature tissues by two-dimensional gel electrophoresis. Two …