User profiles for Lukas M. Simon

Lukas Simon

Baylor College of Medicine
Verified email at bcm.edu
Cited by 6302

[HTML][HTML] Single-cell RNA-seq denoising using a deep count autoencoder

G Eraslan, LM Simon, M Mircea, NS Mueller… - Nature …, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) has enabled researchers to study gene expression
at a cellular resolution. However, noise due to amplification and dropout may obstruct …

A cellular census of human lungs identifies novel cell states in health and in asthma

…, G Kar, M Berg, OA Carpaij, K Polanski, LM Simon… - Nature medicine, 2019 - nature.com
Human lungs enable efficient gas exchange and form an interface with the environment, which
depends on mucosal immunity for protection against infectious agents. Tightly controlled …

[HTML][HTML] Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis

M Strunz, LM Simon, M Ansari, JJ Kathiriya… - Nature …, 2020 - nature.com
The cell type specific sequences of transcriptional programs during lung regeneration have
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model, …

[HTML][HTML] An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

I Angelidis, LM Simon, IE Fernandez, M Strunz… - Nature …, 2019 - nature.com
Aging promotes lung function decline and susceptibility to chronic lung diseases, which are
the third leading cause of death worldwide. Here, we use single cell transcriptomics and …

The spliceosome is a therapeutic vulnerability in MYC-driven cancer

TYT Hsu, LM Simon, NJ Neill, R Marcotte, A Sayad… - Nature, 2015 - nature.com
MYC (also known as c-MYC) overexpression or hyperactivation is one of the most common
drivers of human cancer. Despite intensive study, the MYC oncogene remains recalcitrant to …

Human platelet microRNA-mRNA networks associated with age and gender revealed by integrated plateletomics

LM Simon, LC Edelstein, S Nagalla… - Blood, The Journal …, 2014 - ashpublications.org
There is little data considering relationships among human RNA, demographic variables,
and primary human cell physiology. The platelet RNA and expression-1 study measured …

Racial differences in human platelet PAR4 reactivity reflect expression of PCTP and miR-376c

LC Edelstein, LM Simon, RT Montoya, M Holinstat… - Nature medicine, 2013 - nature.com
Racial differences in the pathophysiology of atherothrombosis are poorly understood. We
explored the function and transcriptome of platelets in healthy black (n = 70) and white (n = 84) …

The human lung cell atlas: a high-resolution reference map of the human lung in health and disease

HB Schiller, DT Montoro, LM Simon… - American journal of …, 2019 - atsjournals.org
Lung disease accounts for every sixth death globally. Profiling the molecular state of all lung
cell types in health and disease is currently revolutionizing the identification of disease …

[PDF][PDF] Spliceosome-targeted therapies trigger an antiviral immune response in triple-negative breast cancer

…, GM Canlas, S Chamakuri, S Singh, LM Simon… - Cell, 2021 - cell.com
Many oncogenic insults deregulate RNA splicing, often leading to hypersensitivity of tumors
to spliceosome-targeted therapies (STTs). However, the mechanisms by which STTs …

[HTML][HTML] EMT cells increase breast cancer metastasis via paracrine GLI activation in neighbouring tumour cells

…, H Zhou, MUJ Oliphant, X Zhang, LM Simon… - Nature …, 2017 - nature.com
Recent fate-mapping studies concluded that EMT is not required for metastasis of carcinomas.
Here we challenge this conclusion by showing that these studies failed to account for …