User profiles for Lukas M. Simon
Lukas SimonBaylor College of Medicine Verified email at bcm.edu Cited by 6302 |
[HTML][HTML] Single-cell RNA-seq denoising using a deep count autoencoder
Single-cell RNA sequencing (scRNA-seq) has enabled researchers to study gene expression
at a cellular resolution. However, noise due to amplification and dropout may obstruct …
at a cellular resolution. However, noise due to amplification and dropout may obstruct …
A cellular census of human lungs identifies novel cell states in health and in asthma
Human lungs enable efficient gas exchange and form an interface with the environment, which
depends on mucosal immunity for protection against infectious agents. Tightly controlled …
depends on mucosal immunity for protection against infectious agents. Tightly controlled …
[HTML][HTML] Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
The cell type specific sequences of transcriptional programs during lung regeneration have
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model, …
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model, …
[HTML][HTML] An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics
I Angelidis, LM Simon, IE Fernandez, M Strunz… - Nature …, 2019 - nature.com
Aging promotes lung function decline and susceptibility to chronic lung diseases, which are
the third leading cause of death worldwide. Here, we use single cell transcriptomics and …
the third leading cause of death worldwide. Here, we use single cell transcriptomics and …
The spliceosome is a therapeutic vulnerability in MYC-driven cancer
MYC (also known as c-MYC) overexpression or hyperactivation is one of the most common
drivers of human cancer. Despite intensive study, the MYC oncogene remains recalcitrant to …
drivers of human cancer. Despite intensive study, the MYC oncogene remains recalcitrant to …
Human platelet microRNA-mRNA networks associated with age and gender revealed by integrated plateletomics
LM Simon, LC Edelstein, S Nagalla… - Blood, The Journal …, 2014 - ashpublications.org
There is little data considering relationships among human RNA, demographic variables,
and primary human cell physiology. The platelet RNA and expression-1 study measured …
and primary human cell physiology. The platelet RNA and expression-1 study measured …
Racial differences in human platelet PAR4 reactivity reflect expression of PCTP and miR-376c
LC Edelstein, LM Simon, RT Montoya, M Holinstat… - Nature medicine, 2013 - nature.com
Racial differences in the pathophysiology of atherothrombosis are poorly understood. We
explored the function and transcriptome of platelets in healthy black (n = 70) and white (n = 84) …
explored the function and transcriptome of platelets in healthy black (n = 70) and white (n = 84) …
The human lung cell atlas: a high-resolution reference map of the human lung in health and disease
Lung disease accounts for every sixth death globally. Profiling the molecular state of all lung
cell types in health and disease is currently revolutionizing the identification of disease …
cell types in health and disease is currently revolutionizing the identification of disease …
[PDF][PDF] Spliceosome-targeted therapies trigger an antiviral immune response in triple-negative breast cancer
Many oncogenic insults deregulate RNA splicing, often leading to hypersensitivity of tumors
to spliceosome-targeted therapies (STTs). However, the mechanisms by which STTs …
to spliceosome-targeted therapies (STTs). However, the mechanisms by which STTs …
[HTML][HTML] EMT cells increase breast cancer metastasis via paracrine GLI activation in neighbouring tumour cells
Recent fate-mapping studies concluded that EMT is not required for metastasis of carcinomas.
Here we challenge this conclusion by showing that these studies failed to account for …
Here we challenge this conclusion by showing that these studies failed to account for …