User profiles for Luz Garcia Alonso
Luz Garcia-AlonsoPrincipal Bioinformatician at Wellcome Sanger Institute Verified email at sanger.ac.uk Cited by 2646 |
[HTML][HTML] Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
L Garcia-Alonso, LF Handfield, K Roberts… - Nature …, 2021 - nature.com
The endometrium, the mucosal lining of the uterus, undergoes dynamic changes throughout
the menstrual cycle in response to ovarian hormones. We have generated dense single-cell …
the menstrual cycle in response to ovarian hormones. We have generated dense single-cell …
Benchmark and integration of resources for the estimation of human transcription factor activities
The prediction of transcription factor (TF) activities from the gene expression of their targets (ie,
TF regulon) is becoming a widely used approach to characterize the functional status of …
TF regulon) is becoming a widely used approach to characterize the functional status of …
[HTML][HTML] Single-cell roadmap of human gonadal development
Gonadal development is a complex process that involves sex determination followed by
divergent maturation into either testes or ovaries 1 . Historically, limited tissue accessibility, a …
divergent maturation into either testes or ovaries 1 . Historically, limited tissue accessibility, a …
[HTML][HTML] Spatial multiomics map of trophoblast development in early pregnancy
…, FCK Wong, MA Sheridan, I Kats, L Garcia-Alonso… - Nature, 2023 - nature.com
The relationship between the human placenta—the extraembryonic organ made by the fetus,
and the decidua—the mucosal layer of the uterus, is essential to nurture and protect the …
and the decidua—the mucosal layer of the uterus, is essential to nurture and protect the …
The functional landscape of the human phosphoproteome
Protein phosphorylation is a key post-translational modification regulating protein function
in almost all cellular processes. Although tens of thousands of phosphorylation sites have …
in almost all cellular processes. Although tens of thousands of phosphorylation sites have …
Transcription factor activities enhance markers of drug sensitivity in cancer
Transcriptional dysregulation induced by aberrant transcription factors (TF) is a key feature
of cancer, but its global influence on drug sensitivity has not been examined. Here, we infer …
of cancer, but its global influence on drug sensitivity has not been examined. Here, we infer …
[HTML][HTML] A pan-cancer catalogue of cancer driver protein interaction interfaces
Despite their importance in maintaining the integrity of all cellular pathways, the role of
mutations on protein-protein interaction (PPI) interfaces as cancer drivers has not been …
mutations on protein-protein interaction (PPI) interfaces as cancer drivers has not been …
Babelomics 5.0: functional interpretation for new generations of genomic data
Babelomics has been running for more than one decade offering a user-friendly interface
for the functional analysis of gene expression and genomic data. Here we present its fifth …
for the functional analysis of gene expression and genomic data. Here we present its fifth …
[HTML][HTML] Widespread post-transcriptional attenuation of genomic copy-number variation in cancer
Copy-number variations (CNVs) are ubiquitous in cancer and often act as driver events, but
the effects of CNVs on the proteome of tumors are poorly understood. Here, we analyze …
the effects of CNVs on the proteome of tumors are poorly understood. Here, we analyze …
PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins
The post-translational regulation of proteins is mainly driven by two molecular events, their
modification by several types of moieties and their interaction with other proteins. These two …
modification by several types of moieties and their interaction with other proteins. These two …