User profiles for Lydia Herzel

Lydia Herzel

Freie Universität Berlin
Verified email at fu-berlin.de
Cited by 1258

Splicing and transcription touch base: co-transcriptional spliceosome assembly and function

L Herzel, DSM Ottoz, T Alpert… - Nature reviews Molecular …, 2017 - nature.com
Several macromolecular machines collaborate to produce eukaryotic messenger RNA. RNA
polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length …

[PDF][PDF] Splicing of nascent RNA coincides with intron exit from RNA polymerase II

FC Oesterreich, L Herzel, K Straube, K Hujer, J Howard… - Cell, 2016 - cell.com
Protein-coding genes in eukaryotes are transcribed by RNA polymerase II (Pol II) and introns
are removed from pre-mRNA by the spliceosome. Understanding the time lag between Pol …

[PDF][PDF] Evolutionary convergence of pathway-specific enzyme expression stoichiometry

JB Lalanne, JC Taggart, MS Guo, L Herzel, A Schieler… - Cell, 2018 - cell.com
Coexpression of proteins in response to pathway-inducing signals is the founding paradigm
of gene regulation. However, it remains unexplored whether the relative abundance of co-…

[HTML][HTML] Counting on co-transcriptional splicing

M Brugiolo, L Herzel, KM Neugebauer - F1000prime reports, 2013 - ncbi.nlm.nih.gov
Splicing is the removal of intron sequences from pre-mRNA by the spliceosome. Researchers
working in multiple model organisms–notably yeast, insects and mammalian cells–have …

Long-read sequencing of nascent RNA reveals coupling among RNA processing events

L Herzel, K Straube, KM Neugebauer - Genome research, 2018 - genome.cshlp.org
Pre-mRNA splicing is accomplished by the spliceosome, a megadalton complex that
assembles de novo on each intron. Because spliceosome assembly and catalysis occur …

Perfect timing: splicing and transcription rates in living cells

T Alpert, L Herzel… - Wiley Interdisciplinary …, 2017 - Wiley Online Library
An important step toward understanding gene regulation is the elucidation of the time
necessary for the completion of individual steps. Measurement of reaction rates can reveal …

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

…, M Gu, J Krishnan, J Zhang, L Herzel… - Genome …, 2017 - genome.cshlp.org
During the maternal-to-zygotic transition (MZT), transcriptionally silent embryos rely on post-transcriptional
regulation of maternal mRNAs until zygotic genome activation (ZGA). RNA-…

N 2-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing

C Wang, N Ulryck, L Herzel, N Pythoud… - Nucleic Acids …, 2023 - academic.oup.com
Modified nucleotides in non-coding RNAs, such as tRNAs and snRNAs, represent an important
layer of gene expression regulation through their ability to fine-tune mRNA maturation …

[PDF][PDF] Widespread transcriptional readthrough caused by Nab2 depletion leads to chimeric transcripts with retained introns

T Alpert, K Straube, FC Oesterreich, L Herzel… - Cell reports, 2020 - cell.com
Nascent RNA sequencing has revealed that pre-mRNA splicing can occur shortly after
introns emerge from RNA polymerase II (RNA Pol II). Differences in co-transcriptional splicing …

Co-transcriptional gene regulation in eukaryotes and prokaryotes

…, J Gordon, L Schärfen, D Zigackova, L Herzel… - … Reviews Molecular Cell …, 2024 - nature.com
Many steps of RNA processing occur during transcription by RNA polymerases. Co-transcriptional
activities are deemed commonplace in prokaryotes, in which the lack of membrane …