Crowdsourcing biomedical research: leveraging communities as innovation engines

…, JC Costello, SH Friend, MR Kellen… - Nature Reviews …, 2016 - nature.com
The generation of large-scale biomedical data is creating unprecedented opportunities for
basic and translational science. Typically, the data producers perform initial analyses, but it is …

[HTML][HTML] Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

…, C P'ng, D Waggott, VY Sabelnykova, MR Kellen… - Nature …, 2015 - nature.com
The detection of somatic mutations from cancer genome sequences is key to understanding
the genetic basis of disease progression, patient survival and response to therapy. …

Remote smartphone monitoring of Parkinson's disease and individual response to therapy

…, BM Bot, M Elson, SM Goldman, MR Kellen… - Nature …, 2022 - nature.com
Remote health assessments that gather real-world data (RWD) outside clinic settings
require a clear understanding of appropriate methods for data collection, quality assessment, …

[HTML][HTML] Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

…, K Ellrott, Y Yuan, C Kandoth, C Wong, MR Kellen… - Nature …, 2013 - nature.com
The Cancer Genome Atlas Pan-Cancer Analysis Working Group collaborated on the Synapse
software platform to share and evolve data, results and methodologies while performing …

Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer

…, BH Mecham, B Sauerwine, MR Kellen… - Science translational …, 2013 - science.org
Although molecular prognostics in breast cancer are among the most successful examples
of translating genomic analysis to clinical applications, optimal approaches to breast cancer …

[HTML][HTML] Developing predictive molecular maps of human disease through community-based modeling

…, B Bot, J Izant, SK Sieberts, MR Kellen… - Nature …, 2012 - nature.com
The inability to identify the molecular causes of disease has led to a disappointing rate of
development of new medicines. By combining the power of community-based modeling with …

[HTML][HTML] Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

…, Z Chong, C Caloian, TN Yamaguchi, MR Kellen… - Genome biology, 2018 - Springer
Background The phenotypes of cancer cells are driven in part by somatic structural variants.
Structural variants can initiate tumors, enhance their aggressiveness, and provide unique …

[HTML][HTML] Summary of the DREAM8 parameter estimation challenge: toward parameter identification for whole-cell models

…, BA Allgood, BM Bot, BR Hoff, MR Kellen… - PLoS computational …, 2015 - journals.plos.org
Whole-cell models that explicitly represent all cellular components at the molecular level
have the potential to predict phenotype from genotype. However, even for simple bacteria, …

[HTML][HTML] Global optimization of somatic variant identification in cancer genomes with a global community challenge

…, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen… - Nature …, 2014 - nature.com
Cancer is a family of diseases caused by somatic genetic mutations. Fundamental questions
remain about the causes of these mutations and their roles in shaping cellular phenotypes 1…

Transient transcapillary exchange of water driven by osmotic forces in the heart

MR Kellen… - American Journal of …, 2003 - journals.physiology.org
… 29 Kellen MR and Bassingthwaighte JB. An integrative model of coupled water and solute
exchange in cardiac tissue. Am J Physiol Heart Circ Physiol 285: H1303–H1316, 2003. …