Interventions for reversing delayed-onset postoperative paraplegia after thoracic aortic reconstruction
…, ML McGarvey, MM Stecker, MS Hogan… - The Annals of thoracic …, 2002 - Elsevier
Background. Delayed postoperative paraplegia is a recognized complication of thoracic (TAA)
or thoracoabdominal aortic aneurysm (TAAA) repair. The purpose of this study was to …
or thoracoabdominal aortic aneurysm (TAAA) repair. The purpose of this study was to …
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region
…, G Westby, G Shen, X Feng, MS Hogan… - Genome …, 2020 - genome.cshlp.org
Effective public response to a pandemic relies upon accurate measurement of the extent and
dynamics of an outbreak. Viral genome sequencing has emerged as a powerful approach …
dynamics of an outbreak. Viral genome sequencing has emerged as a powerful approach …
[PDF][PDF] Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus
…, C Coelho, AM Ribeiro-dos-Santos, G Ellis, MS Hogan… - Molecular cell, 2023 - cell.com
Sox2 expression in mouse embryonic stem cells (mESCs) depends on a distal cluster of
DNase I hypersensitive sites (DHSs), but their individual contributions and degree of …
DNase I hypersensitive sites (DHSs), but their individual contributions and degree of …
An effector index to predict target genes at GWAS loci
Drug development and biological discovery require effective strategies to map existing
genetic associations to causal genes. To approach this problem, we selected 12 common …
genetic associations to causal genes. To approach this problem, we selected 12 common …
A versatile platform for locus-scale genome rewriting and verification
…, R Ordoñez, E Huang, MS Hogan… - Proceedings of the …, 2021 - National Acad Sciences
Routine rewriting of loci associated with human traits and diseases would facilitate their
functional analysis. However, existing DNA integration approaches are limited in terms of …
functional analysis. However, existing DNA integration approaches are limited in terms of …
De novo assembly and delivery to mouse cells of a 101 kb functional human gene
Abstract Design and large-scale synthesis of DNA has been applied to the functional study
of viral and microbial genomes. New and expanded technology development is required to …
of viral and microbial genomes. New and expanded technology development is required to …
[PDF][PDF] Transient pairing of homologous Oct4 alleles accompanies the onset of embryonic stem cell differentiation
MS Hogan, DE Parfitt, CJ Zepeda-Mendoza, MM Shen… - Cell stem cell, 2015 - cell.com
The relationship between chromatin organization and transcriptional regulation is an area of
intense investigation. We characterized the spatial relationships between alleles of the Oct4…
intense investigation. We characterized the spatial relationships between alleles of the Oct4…
Genomic context sensitivity of insulator function
AM Ribeiro-dos-Santos, MS Hogan, RD Luther… - Genome …, 2022 - genome.cshlp.org
The specificity of interactions between genomic regulatory elements and potential target
genes is influenced by the binding of insulator proteins such as CTCF, which can act as potent …
genes is influenced by the binding of insulator proteins such as CTCF, which can act as potent …
Contribution of the eighth transmembrane segment to the function of the CFTR chloride channel pore
A Negoda, MS Hogan, EA Cowley… - Cellular and molecular life …, 2019 - Springer
Our molecular understanding of the cystic fibrosis transmembrane conductance regulator (CFTR)—the
chloride channel that is mutated in cystic fibrosis—has been greatly enhanced by …
chloride channel that is mutated in cystic fibrosis—has been greatly enhanced by …
[HTML][HTML] Tissue context determines the penetrance of regulatory DNA variation
JM Halow, R Byron, MS Hogan, R Ordoñez… - Nature …, 2021 - nature.com
Functional assessment of disease-associated sequence variation at non-coding regulatory
elements is complicated by their high degree of context sensitivity to both the local chromatin …
elements is complicated by their high degree of context sensitivity to both the local chromatin …