User profiles for M. T. Facciotti
Marc T. FacciottiProfessor of Biomedical Engineering, University of California, Davis Verified email at ucdavis.edu Cited by 4832 |
[HTML][HTML] An integrated pipeline for de novo assembly of microbial genomes
Remarkable advances in DNA sequencing technology have created a need for de novo
genome assembly methods tailored to work with the new sequencing data types. Many such …
genome assembly methods tailored to work with the new sequencing data types. Many such …
[HTML][HTML] Evaluation of algorithm performance in ChIP-seq peak detection
EG Wilbanks, MT Facciotti - PloS one, 2010 - journals.plos.org
Next-generation DNA sequencing coupled with chromatin immunoprecipitation (ChIP-seq)
is revolutionizing our ability to interrogate whole genome protein-DNA interactions. …
is revolutionizing our ability to interrogate whole genome protein-DNA interactions. …
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
We report the complete sequence of the 4,274,642-bp genome of Haloarcula marismortui, a
halophilic archaeal isolate from the Dead Sea. The genome is organized into nine circular …
halophilic archaeal isolate from the Dead Sea. The genome is organized into nine circular …
[HTML][HTML] A predictive model for transcriptional control of physiology in a free living cell
The environment significantly influences the dynamic expression and assembly of all
components encoded in the genome of an organism into functional biological networks. We have …
components encoded in the genome of an organism into functional biological networks. We have …
[HTML][HTML] Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response
Organisms across the tree of life use a variety of mechanisms to respond to stress-inducing
fluctuations in osmotic conditions. Cellular response mechanisms and phenotypes …
fluctuations in osmotic conditions. Cellular response mechanisms and phenotypes …
Mauve assembly metrics
High-throughput DNA sequencing technologies have spurred the development of numerous
novel methods for genome assembly. With few exceptions, these algorithms are heuristic …
novel methods for genome assembly. With few exceptions, these algorithms are heuristic …
Prevalence of transcription promoters within archaeal operons and coding sequences
Despite the knowledge of complex prokaryotic‐transcription mechanisms, generalized rules,
such as the simplified organization of genes into operons with well‐defined promoters and …
such as the simplified organization of genes into operons with well‐defined promoters and …
IRF-1 and miRNA126 modulate VCAM-1 expression in response to a high-fat meal
…, K Tam, CM Edwards, MT Facciotti… - Circulation …, 2012 - Am Heart Assoc
Rationale: A high-fat diet accompanied by hypertriglyceridemia increases an individual’s risk
for development of atherosclerosis. An early event in this process is monocyte recruitment …
for development of atherosclerosis. An early event in this process is monocyte recruitment …
[HTML][HTML] Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with …
…, B Vanden Heuvel, P Pujic, MT Facciotti… - PloS one, 2015 - journals.plos.org
Frankia strains are nitrogen-fixing soil actinobacteria that can form root symbioses with
actinorhizal plants. Phylogenetically, symbiotic frankiae can be divided into three clusters, and …
actinorhizal plants. Phylogenetically, symbiotic frankiae can be divided into three clusters, and …
A systems view of haloarchaeal strategies to withstand stress from transition metals
A Kaur, M Pan, M Meislin, MT Facciotti… - Genome …, 2006 - genome.cshlp.org
… on the basis of mRNA level changes and putative functions, the regulatory control imposed
by the GTFs were experimentally measured with ChIP-chip (MT Facciotti, M. Pan, A. Kaur, M. …
by the GTFs were experimentally measured with ChIP-chip (MT Facciotti, M. Pan, A. Kaur, M. …