To image the accessible genome at nanometer scale in situ, we developed three-dimensional
assay for transposase-accessible chromatin-photoactivated localization microscopy (3D …

We study by molecular dynamics simulations supercooled water with the TIP4P/2005
potential. This model is able to predict many properties of water in a large range of the …

In development of an embryo, healing of a wound, or progression of a carcinoma, a requisite
event is collective epithelial cellular migration. For example, cells at the advancing front of a …

We perform an accurate analysis of the density self-correlation functions of TIP4P/2005
supercooled water on approaching the region of the liquid-liquid critical point. In a previous work …

Bronchospasm compresses the bronchial epithelium, and this compressive stress has been
implicated in asthma pathogenesis. However, the molecular mechanisms by which this …

We study the translational single particle dynamics of hydration water of lysozyme upon
cooling by means of molecular dynamics simulations. We find that water close to the protein …

Mammalian chromosomes are organized into megabase-sized compartments that are further
subdivided into topologically associating domains (TADs). While the formation of TADs is …

… DE genes at 24 hours after compression and DE genes in asthmatic cells (hypergeometric
P = 4.64 × 10 −12 ). To further identify global patterns of similarities, we selected the DE … DE …

… The paper is structured as follows: in Section 2 the details of the simulations used in this
work are presented. Section 3 describes FSC in several systems analyzed by our group, from …

We derive by computer simulation the radial distribution functions of water confined in a
silica pore modeled to reproduce MCM-41. We perform the calculations in a range of …