User profiles for M. Reczko

Martin Reczko

Biomedical Sciences Research Center Alexander Fleming
Verified email at fleming.gr
Cited by 8489

Lost in translation: an assessment and perspective for computational microRNA target identification

…, M Maragkakis, GL Papadopoulos, M Reczko… - …, 2009 - academic.oup.com
MicroRNAs (miRNAs) are a class of short endogenously expressed RNA molecules that
regulate gene expression by binding directly to the messenger RNA of protein coding genes. …

DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows

…, IS Vlachos, T Vergoulis, M Reczko… - Nucleic acids …, 2013 - academic.oup.com
… Further details on the microT-CDS algorithm and the utilized training sets can be found in
the relevant publication by Reczko et al. (7). DIANA-microT-CDS provides increased accuracy …

DIANA-microT web server: elucidating microRNA functions through target prediction

M Maragkakis, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
Computational microRNA (miRNA) target prediction is one of the key means for deciphering
the role of miRNAs in development and disease. Here, we present the DIANA-microT web …

DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways

…, G Georgakilas, M Reczko, M Maragkakis… - Nucleic acids …, 2012 - academic.oup.com
MicroRNAs (miRNAs) are key regulators of diverse biological processes and their functional
analysis has been deemed central in many research pipelines. The new version of DIANA-…

Functional microRNA targets in protein coding sequences

M Reczko, M Maragkakis, P Alexiou, I Grosse… - …, 2012 - academic.oup.com
Motivation: Experimental evidence has accumulated showing that microRNA (miRNA)
binding sites within protein coding sequences (CDSs) are functional in controlling gene …

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

…, G Georgakilas, M Maragkakis, M Reczko… - Nucleic acids …, 2012 - academic.oup.com
As the relevant literature and the number of experiments increase at a super linear rate,
databases that curate and collect experimentally verified microRNA (miRNA) targets have …

The database of experimentally supported targets: a functional update of TarBase

GL Papadopoulos, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
TarBase5.0 is a database which houses a manually curated collection of experimentally
supported microRNA (miRNA) targets in several animal species of central scientific interest, …

[HTML][HTML] Accurate microRNA target prediction correlates with protein repression levels

…, P Alexiou, GL Papadopoulos, M Reczko… - BMC …, 2009 - Springer
… , M r, m, b (c) represents the number of MREs of the m mock miRNA categorized to binding
category b succeeding a conservation score greater than c and corresponding to real miRNA r…

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs

…, N Kostoulas, M Reczko, M Maragkakis… - Nucleic acids …, 2013 - academic.oup.com
Recently, the attention of the research community has been focused on long non-coding
RNAs (lncRNAs) and their physiological/pathological implications. As the number of …

DIANA-mirPath: Integrating human and mouse microRNAs in pathways

…, P Alexiou, M Maragkakis, M Reczko… - …, 2009 - academic.oup.com
DIANA-mirPath is a web-based computational tool developed to identify molecular pathways
potentially altered by the expression of single or multiple microRNAs. The software …