User profiles for M. Reczko
Martin ReczkoBiomedical Sciences Research Center Alexander Fleming Verified email at fleming.gr Cited by 8489 |
Lost in translation: an assessment and perspective for computational microRNA target identification
…, M Maragkakis, GL Papadopoulos, M Reczko… - …, 2009 - academic.oup.com
MicroRNAs (miRNAs) are a class of short endogenously expressed RNA molecules that
regulate gene expression by binding directly to the messenger RNA of protein coding genes. …
regulate gene expression by binding directly to the messenger RNA of protein coding genes. …
DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows
… Further details on the microT-CDS algorithm and the utilized training sets can be found in
the relevant publication by Reczko et al. (7). DIANA-microT-CDS provides increased accuracy …
the relevant publication by Reczko et al. (7). DIANA-microT-CDS provides increased accuracy …
DIANA-microT web server: elucidating microRNA functions through target prediction
M Maragkakis, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
Computational microRNA (miRNA) target prediction is one of the key means for deciphering
the role of miRNAs in development and disease. Here, we present the DIANA-microT web …
the role of miRNAs in development and disease. Here, we present the DIANA-microT web …
DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways
MicroRNAs (miRNAs) are key regulators of diverse biological processes and their functional
analysis has been deemed central in many research pipelines. The new version of DIANA-…
analysis has been deemed central in many research pipelines. The new version of DIANA-…
Functional microRNA targets in protein coding sequences
Motivation: Experimental evidence has accumulated showing that microRNA (miRNA)
binding sites within protein coding sequences (CDSs) are functional in controlling gene …
binding sites within protein coding sequences (CDSs) are functional in controlling gene …
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
As the relevant literature and the number of experiments increase at a super linear rate,
databases that curate and collect experimentally verified microRNA (miRNA) targets have …
databases that curate and collect experimentally verified microRNA (miRNA) targets have …
The database of experimentally supported targets: a functional update of TarBase
GL Papadopoulos, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
TarBase5.0 is a database which houses a manually curated collection of experimentally
supported microRNA (miRNA) targets in several animal species of central scientific interest, …
supported microRNA (miRNA) targets in several animal species of central scientific interest, …
[HTML][HTML] Accurate microRNA target prediction correlates with protein repression levels
… , M r, m, b (c) represents the number of MREs of the m mock miRNA categorized to binding
category b succeeding a conservation score greater than c and corresponding to real miRNA r…
category b succeeding a conservation score greater than c and corresponding to real miRNA r…
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
Recently, the attention of the research community has been focused on long non-coding
RNAs (lncRNAs) and their physiological/pathological implications. As the number of …
RNAs (lncRNAs) and their physiological/pathological implications. As the number of …
DIANA-mirPath: Integrating human and mouse microRNAs in pathways
DIANA-mirPath is a web-based computational tool developed to identify molecular pathways
potentially altered by the expression of single or multiple microRNAs. The software …
potentially altered by the expression of single or multiple microRNAs. The software …